FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9744, 532 aa
  1>>>pF1KB9744 532 - 532 aa - 532 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.2728+/-0.000888; mu= -1.9083+/- 0.054
 mean_var=297.9224+/-60.487, 0's: 0 Z-trim(116.3): 24  B-trim: 38 in 1/52
 Lambda= 0.074306
 statistics sampled from 16879 (16900) to 16879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.519), width:  16
 Scan time:  4.460

The best scores are:                                      opt bits E(32554)
CCDS32757.1 CBX2 gene_id:84733|Hs108|chr17         ( 532) 3508 389.2 6.2e-108
CCDS11764.1 CBX2 gene_id:84733|Hs108|chr17         ( 211)  647 82.2 6.5e-16


>>CCDS32757.1 CBX2 gene_id:84733|Hs108|chr17              (532 aa)
 initn: 3508 init1: 3508 opt: 3508  Z-score: 2051.3  bits: 389.2 E(32554): 6.2e-108
Smith-Waterman score: 3508; 100.0% identity (100.0% similar) in 532 aa overlap (1-532:1-532)

               10        20        30        40        50        60
pF1KB9 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKATRRPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKATRRPV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SLAKVLKTARKDLGAPASKLPPPLSAPVAGLAALKAHAKEACGGPSAMATPENLASLMKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SLAKVLKTARKDLGAPASKLPPPLSAPVAGLAALKAHAKEACGGPSAMATPENLASLMKG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 MASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATNKCGLGLDLKVRTQKGELG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MASSPGRGGISWQSSIVHYMNRMTQSQAQAASRLALKAQATNKCGLGLDLKVRTQKGELG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 MSPPGSKIPKAPSGGAVEQKVGNTGGPPHTHGASRVPAGCPGPQPAPTQELSLQVLDLQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSPPGSKIPKAPSGGAVEQKVGNTGGPPHTHGASRVPAGCPGPQPAPTQELSLQVLDLQS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 VKNGMPGVGLLARHATATKGVPATNPAPGKGTGSGLIGASGATMPTDTSKSEKLASRAVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VKNGMPGVGLLARHATATKGVPATNPAPGKGTGSGLIGASGATMPTDTSKSEKLASRAVA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PPTPASKRDCVKGSATPSGQESRTAPGEARKAATLPEMSAGEESSSSDSDPDSASPPSTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PPTPASKRDCVKGSATPSGQESRTAPGEARKAATLPEMSAGEESSSSDSDPDSASPPSTG
              430       440       450       460       470       480

              490       500       510       520       530  
pF1KB9 QNPSVSVQTSQDWKPTRSLIEHVFVTDVTANLITVTVKESPTSVGFFNLRHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QNPSVSVQTSQDWKPTRSLIEHVFVTDVTANLITVTVKESPTSVGFFNLRHY
              490       500       510       520       530  

>>CCDS11764.1 CBX2 gene_id:84733|Hs108|chr17              (211 aa)
 initn: 686 init1: 647 opt: 647  Z-score: 399.2  bits: 82.2 E(32554): 6.5e-16
Smith-Waterman score: 647; 100.0% identity (100.0% similar) in 96 aa overlap (1-96:1-96)

               10        20        30        40        50        60
pF1KB9 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSKSSSSSSSSTSSSSSS
       ::::::::::::::::::::::::::::::::::::                        
CCDS11 KEHEKEVQNRKRGKRPRGRPRKLTAMSSCSRRSKLKVGGCAGYADPTSQHPLGVGGRQRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 DEEDDSDLDAKRGPRGRETHPVPQKKAQILVAKPELKDPIRKKRGRKPLPPEQKATRRPV
                                                                   
CCDS11 GLGPSGRGWHFCQQSVPLLGKQEPPFFLSLSFCCQGPQPAESSSPPLPGASCFSLSCTPL
              130       140       150       160       170       180




532 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:39:49 2016 done: Fri Nov  4 18:39:49 2016
 Total Scan time:  4.460 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]