FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9769, 1047 aa
  1>>>pF1KB9769 1047 - 1047 aa - 1047 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1726+/-0.0013; mu= 10.3596+/- 0.079
 mean_var=206.7438+/-42.160, 0's: 0 Z-trim(106.8): 46  B-trim: 258 in 1/53
 Lambda= 0.089199
 statistics sampled from 9187 (9211) to 9187 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.597), E-opt: 0.2 (0.283), width:  16
 Scan time:  4.860

The best scores are:                                      opt bits E(32554)
CCDS9569.1 SUPT16H gene_id:11198|Hs108|chr14       (1047) 6822 892.0       0


>>CCDS9569.1 SUPT16H gene_id:11198|Hs108|chr14            (1047 aa)
 initn: 6822 init1: 6822 opt: 6822  Z-score: 4757.7  bits: 892.0 E(32554):    0
Smith-Waterman score: 6822; 100.0% identity (100.0% similar) in 1047 aa overlap (1-1047:1-1047)

               10        20        30        40        50        60
pF1KB9 MAVTLDKDAYYRRVKRLYSNWRKGEDEYANVDAIVVSVGVDEEIVYAKSTALQTWLFGYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MAVTLDKDAYYRRVKRLYSNWRKGEDEYANVDAIVVSVGVDEEIVYAKSTALQTWLFGYE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLIREKNESNKSSFDK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLIREKNESNKSSFDK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 MIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFDKIDISAVVAYTIAVKEDGEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFDKIDISAVVAYTIAVKEDGEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 NLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 MCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPSQEVQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPSQEVQE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 NYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 NYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 VKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 VKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 LAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIM
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 PVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 PVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITY
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 RASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 RASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 KLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 KLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB9 HFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 HFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAF
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB9 KNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 KNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB9 ELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 ELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSL
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB9 NWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEEGDSESEIEDETFNPSEDDYEEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 NWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEEGDSESEIEDETFNPSEDDYEEEEE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB9 DSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 DSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKR
              970       980       990      1000      1010      1020

             1030      1040       
pF1KB9 KASVHSSGRGSNRGSRHSSAPPKKKRK
       :::::::::::::::::::::::::::
CCDS95 KASVHSSGRGSNRGSRHSSAPPKKKRK
             1030      1040       




1047 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:46:41 2016 done: Fri Nov  4 18:46:41 2016
 Total Scan time:  4.860 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]