FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9771, 538 aa
  1>>>pF1KB9771 538 - 538 aa - 538 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7321+/-0.00102; mu= 2.9762+/- 0.061
 mean_var=199.8605+/-41.219, 0's: 0 Z-trim(110.8): 59  B-trim: 0 in 0/52
 Lambda= 0.090722
 statistics sampled from 11862 (11907) to 11862 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.366), width:  16
 Scan time:  3.280

The best scores are:                                      opt bits E(32554)
CCDS30983.1 RBBP5 gene_id:5929|Hs108|chr1          ( 538) 3620 486.6  3e-137
CCDS53463.1 RBBP5 gene_id:5929|Hs108|chr1          ( 500) 3315 446.7  3e-125


>>CCDS30983.1 RBBP5 gene_id:5929|Hs108|chr1               (538 aa)
 initn: 3620 init1: 3620 opt: 3620  Z-score: 2577.5  bits: 486.6 E(32554): 3e-137
Smith-Waterman score: 3620; 99.8% identity (99.8% similar) in 538 aa overlap (1-538:1-538)

               10        20        30        40        50        60
pF1KB9 MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NKVLVCPMKSAPVMLTLSDSKHVFLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKT
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS30 NKVLVCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 EPEQTGADAAEDEEVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEENPYGPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 EPEQTGADAAEDEEVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEENPYGPPP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 DAVQTSLMDEGASSEKKRQSSADGSQPPKKKPKTTNIELQGVPNDEVHPLLGVKGDGKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DAVQTSLMDEGASSEKKRQSSADGSQPPKKKPKTTNIELQGVPNDEVHPLLGVKGDGKSK
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 KKQAGRPKGSKGKEKDSPFKPKLYKGDRGLPLEGSAKGKVQAELSQPLTAGGAISELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KKQAGRPKGSKGKEKDSPFKPKLYKGDRGLPLEGSAKGKVQAELSQPLTAGGAISELL
              490       500       510       520       530        

>>CCDS53463.1 RBBP5 gene_id:5929|Hs108|chr1               (500 aa)
 initn: 3315 init1: 3315 opt: 3315  Z-score: 2362.2  bits: 446.7 E(32554): 3e-125
Smith-Waterman score: 3315; 99.8% identity (99.8% similar) in 491 aa overlap (1-491:1-491)

               10        20        30        40        50        60
pF1KB9 MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IISAHIHPVCSLCWSRDGHKLVSASTDNIVSQWDVLSGDCDQRFRFPSPILKVQYHPRDQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NKVLVCPMKSAPVMLTLSDSKHVFLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKT
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS53 NKVLVCPMKSAPVMLTLSDSKHVVLPVDDDSDLNVVASFDRRGEYIYTGNAKGKILVLKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DSQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PMQKLQDLVNRTPWKKCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 EPEQTGADAAEDEEVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEENPYGPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EPEQTGADAAEDEEVDVTSVDPIAAFCSSDEELEDSKALLYLPIAPEVEDPEENPYGPPP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 DAVQTSLMDEGASSEKKRQSSADGSQPPKKKPKTTNIELQGVPNDEVHPLLGVKGDGKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DAVQTSLMDEGASSEKKRQSSADGSQPPKKKPKTTNIELQGVPNDEVHPLLGVKGDGKSK
              430       440       450       460       470       480

              490       500       510       520       530        
pF1KB9 KKQAGRPKGSKGKEKDSPFKPKLYKGDRGLPLEGSAKGKVQAELSQPLTAGGAISELL
       :::::::::::                                               
CCDS53 KKQAGRPKGSKAGGAISELL                                      
              490       500                                      




538 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:27:07 2016 done: Fri Nov  4 21:27:07 2016
 Total Scan time:  3.280 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]