FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9780, 68 aa
  1>>>pF1KB9780 68 - 68 aa - 68 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9323+/-0.000524; mu= 7.7919+/- 0.032
 mean_var=46.5773+/- 9.113, 0's: 0 Z-trim(112.1): 20  B-trim: 0 in 0/50
 Lambda= 0.187926
 statistics sampled from 12930 (12949) to 12930 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.398), width:  16
 Scan time:  1.320

The best scores are:                                      opt bits E(32554)
CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19          (  68)  439 125.6 2.3e-30
CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1         (  72)  363 105.0 3.9e-24
CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14         (  71)  306 89.5 1.7e-19
CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1            (  75)  283 83.3 1.4e-17
CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11           (  75)  275 81.2 6.2e-17
CCDS12687.1 GNG8 gene_id:94235|Hs108|chr19         (  70)  263 77.9 5.5e-16
CCDS696.1 GNG5 gene_id:2787|Hs108|chr1             (  68)  254 75.4 2.9e-15
CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9          (  68)  249 74.1 7.5e-15


>>CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19               (68 aa)
 initn: 439 init1: 439 opt: 439  Z-score: 658.5  bits: 125.6 E(32554): 2.3e-30
Smith-Waterman score: 439; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
               10        20        30        40        50        60

               
pF1KB9 DKKPCIIL
       ::::::::
CCDS12 DKKPCIIL
               

>>CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1              (72 aa)
 initn: 363 init1: 363 opt: 363  Z-score: 546.8  bits: 105.0 E(32554): 3.9e-24
Smith-Waterman score: 363; 77.6% identity (97.0% similar) in 67 aa overlap (2-68:6-72)

                   10        20        30        40        50      
pF1KB9     MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASE
            ..::::::::. :.:::.::.:::::::::..:::::::.:::.::::.:.:.::
CCDS30 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
               10        20        30        40        50        60

         60        
pF1KB9 NPFKDKKPCIIL
       ::::::: ::::
CCDS30 NPFKDKKTCIIL
               70  

>>CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14              (71 aa)
 initn: 300 init1: 300 opt: 306  Z-score: 463.3  bits: 89.5 E(32554): 1.7e-19
Smith-Waterman score: 306; 72.7% identity (90.9% similar) in 66 aa overlap (4-68:6-71)

                 10        20        30        40        50        
pF1KB9   MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENP
            : .:::::::::::..::.:.::::::::.:::.::: ::..::::. :::::::
CCDS32 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
               10        20        30        40        50        60

       60         
pF1KB9 FKDKKP-CIIL
       :..::  : ::
CCDS32 FREKKFFCAIL
               70 

>>CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1                 (75 aa)
 initn: 277 init1: 277 opt: 283  Z-score: 429.2  bits: 83.3 E(32554): 1.4e-17
Smith-Waterman score: 283; 60.3% identity (89.7% similar) in 68 aa overlap (2-68:8-75)

                     10        20        30        40        50    
pF1KB9       MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPA
              ..:..:.:::: ::::..:: ..:.:::.::.::..::: :.:.:::.. :::
CCDS16 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               10        20        30        40        50        60

           60         
pF1KB9 SENPFKDKKP-CIIL
       :::::..::  : ::
CCDS16 SENPFREKKFFCTIL
               70     

>>CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11                (75 aa)
 initn: 272 init1: 272 opt: 275  Z-score: 417.5  bits: 81.2 E(32554): 6.2e-17
Smith-Waterman score: 275; 60.9% identity (88.4% similar) in 69 aa overlap (1-68:7-75)

                     10        20        30        40        50    
pF1KB9       MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPA
             ...: .:.::::.::::.:::.. ::::::::.:::.::. :: .:::.. ::.
CCDS80 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
               10        20        30        40        50        60

           60         
pF1KB9 SENPFKDKKP-CIIL
       :::::..::  : .:
CCDS80 SENPFREKKFFCALL
               70     

>>CCDS12687.1 GNG8 gene_id:94235|Hs108|chr19              (70 aa)
 initn: 264 init1: 255 opt: 263  Z-score: 400.4  bits: 77.9 E(32554): 5.5e-16
Smith-Waterman score: 263; 57.1% identity (92.1% similar) in 63 aa overlap (7-68:8-70)

                10        20        30        40        50         
pF1KB9  MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPF
              ::.::: ::::..:..:.:.:::.::..:...:: ::..:::.. :::.::::
CCDS12 MSNNMAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPAAENPF
               10        20        30        40        50        60

      60         
pF1KB9 KDKKP-CIIL
       .::.  :..:
CCDS12 RDKRLFCVLL
               70

>>CCDS696.1 GNG5 gene_id:2787|Hs108|chr1                  (68 aa)
 initn: 258 init1: 254 opt: 254  Z-score: 387.5  bits: 75.4 E(32554): 2.9e-15
Smith-Waterman score: 254; 51.5% identity (86.8% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
       ::.....:  .:.:.:::.:::..:.:::.::.:: ..: :.:..::::.:: .: :::.
CCDS69 MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSSSTNPFR
               10        20        30        40        50        60

               
pF1KB9 DKKPCIIL
        .: : .:
CCDS69 PQKVCSFL
               

>>CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9               (68 aa)
 initn: 265 init1: 249 opt: 249  Z-score: 380.1  bits: 74.1 E(32554): 7.5e-15
Smith-Waterman score: 249; 52.9% identity (82.4% similar) in 68 aa overlap (1-68:1-68)

               10        20        30        40        50        60
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
       ::.  . .  ..:::::..:::.::::::.::..:..:: :.: .: :::::::. :::.
CCDS35 MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPAGSNPFR
               10        20        30        40        50        60

               
pF1KB9 DKKPCIIL
       . . : .:
CCDS35 EPRSCALL
               




68 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:52:48 2016 done: Fri Nov  4 18:52:48 2016
 Total Scan time:  1.320 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]