Result of FASTA (omim) for
pF1KB9780
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9780, 68 aa
1>>>pF1KB9780 68 - 68 aa - 68 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8805+/-0.00026; mu= 8.2127+/- 0.016
mean_var=48.7601+/- 9.588, 0's: 0 Z-trim(119.3): 72 B-trim: 0 in 0/53
Lambda= 0.183672
statistics sampled from 33092 (33169) to 33092 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.389), width: 16
Scan time: 3.800
The best scores are: opt bits E(85289)
NP_443079 (OMIM: 604430) guanine nucleotide-bindin ( 68) 439 123.1 3.5e-29
XP_016882095 (OMIM: 604430) PREDICTED: guanine nuc ( 68) 439 123.1 3.5e-29
XP_016857299 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 363 102.9 4.3e-23
XP_016857300 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 363 102.9 4.3e-23
NP_061329 (OMIM: 615405) guanine nucleotide-bindin ( 72) 363 102.9 4.3e-23
XP_016857298 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 363 102.9 4.3e-23
XP_011535148 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 306 87.8 1.5e-18
XP_016876865 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 306 87.8 1.5e-18
XP_006720236 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 306 87.8 1.5e-18
NP_444292 (OMIM: 606981) guanine nucleotide-bindin ( 71) 306 87.8 1.5e-18
XP_016876866 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 306 87.8 1.5e-18
NP_001230702 (OMIM: 606981) guanine nucleotide-bin ( 71) 306 87.8 1.5e-18
NP_001230703 (OMIM: 606981) guanine nucleotide-bin ( 71) 306 87.8 1.5e-18
XP_011542469 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 283 81.7 1.1e-16
NP_001092191 (OMIM: 604388) guanine nucleotide-bin ( 75) 283 81.7 1.1e-16
NP_001092192 (OMIM: 604388) guanine nucleotide-bin ( 75) 283 81.7 1.1e-16
NP_004476 (OMIM: 604388) guanine nucleotide-bindin ( 75) 283 81.7 1.1e-16
XP_006711824 (OMIM: 604388) PREDICTED: guanine nuc ( 75) 283 81.7 1.1e-16
NP_036334 (OMIM: 608941) guanine nucleotide-bindin ( 75) 275 79.6 4.7e-16
XP_006718563 (OMIM: 608941) PREDICTED: guanine nuc ( 75) 275 79.6 4.7e-16
NP_005265 (OMIM: 600874) guanine nucleotide-bindin ( 68) 254 74.0 2e-14
NP_001185593 (OMIM: 604389) guanine nucleotide-bin ( 68) 249 72.7 5.1e-14
NP_001017998 (OMIM: 604389) guanine nucleotide-bin ( 68) 249 72.7 5.1e-14
NP_001185684 (OMIM: 139391) guanine nucleotide-bin ( 69) 175 53.1 4.1e-08
NP_001185683 (OMIM: 139391) guanine nucleotide-bin ( 69) 175 53.1 4.1e-08
NP_001185685 (OMIM: 139391) guanine nucleotide-bin ( 69) 175 53.1 4.1e-08
NP_113686 (OMIM: 139391) guanine nucleotide-bindin ( 69) 175 53.1 4.1e-08
NP_004117 (OMIM: 604390) guanine nucleotide-bindin ( 73) 172 52.3 7.5e-08
NP_068774 (OMIM: 189970) guanine nucleotide-bindin ( 74) 152 47.0 3e-06
NP_001316355 (OMIM: 189970) guanine nucleotide-bin ( 74) 152 47.0 3e-06
NP_057625 (OMIM: 607298) guanine nucleotide-bindin ( 67) 109 35.6 0.0074
>>NP_443079 (OMIM: 604430) guanine nucleotide-binding pr (68 aa)
initn: 439 init1: 439 opt: 439 Z-score: 644.8 bits: 123.1 E(85289): 3.5e-29
Smith-Waterman score: 439; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
10 20 30 40 50 60
pF1KB9 DKKPCIIL
::::::::
NP_443 DKKPCIIL
>>XP_016882095 (OMIM: 604430) PREDICTED: guanine nucleot (68 aa)
initn: 439 init1: 439 opt: 439 Z-score: 644.8 bits: 123.1 E(85289): 3.5e-29
Smith-Waterman score: 439; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68)
10 20 30 40 50 60
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENPFK
10 20 30 40 50 60
pF1KB9 DKKPCIIL
::::::::
XP_016 DKKPCIIL
>>XP_016857299 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 363 init1: 363 opt: 363 Z-score: 535.6 bits: 102.9 E(85289): 4.3e-23
Smith-Waterman score: 363; 77.6% identity (97.0% similar) in 67 aa overlap (2-68:6-72)
10 20 30 40 50
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASE
..::::::::. :.:::.::.:::::::::..:::::::.:::.::::.:.:.::
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
60
pF1KB9 NPFKDKKPCIIL
::::::: ::::
XP_016 NPFKDKKTCIIL
70
>>XP_016857300 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 363 init1: 363 opt: 363 Z-score: 535.6 bits: 102.9 E(85289): 4.3e-23
Smith-Waterman score: 363; 77.6% identity (97.0% similar) in 67 aa overlap (2-68:6-72)
10 20 30 40 50
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASE
..::::::::. :.:::.::.:::::::::..:::::::.:::.::::.:.:.::
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
60
pF1KB9 NPFKDKKPCIIL
::::::: ::::
XP_016 NPFKDKKTCIIL
70
>>NP_061329 (OMIM: 615405) guanine nucleotide-binding pr (72 aa)
initn: 363 init1: 363 opt: 363 Z-score: 535.6 bits: 102.9 E(85289): 4.3e-23
Smith-Waterman score: 363; 77.6% identity (97.0% similar) in 67 aa overlap (2-68:6-72)
10 20 30 40 50
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASE
..::::::::. :.:::.::.:::::::::..:::::::.:::.::::.:.:.::
NP_061 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
60
pF1KB9 NPFKDKKPCIIL
::::::: ::::
NP_061 NPFKDKKTCIIL
70
>>XP_016857298 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 363 init1: 363 opt: 363 Z-score: 535.6 bits: 102.9 E(85289): 4.3e-23
Smith-Waterman score: 363; 77.6% identity (97.0% similar) in 67 aa overlap (2-68:6-72)
10 20 30 40 50
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASE
..::::::::. :.:::.::.:::::::::..:::::::.:::.::::.:.:.::
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTSE
10 20 30 40 50 60
60
pF1KB9 NPFKDKKPCIIL
::::::: ::::
XP_016 NPFKDKKTCIIL
70
>>XP_011535148 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 300 init1: 300 opt: 306 Z-score: 454.0 bits: 87.8 E(85289): 1.5e-18
Smith-Waterman score: 306; 72.7% identity (90.9% similar) in 66 aa overlap (4-68:6-71)
10 20 30 40 50
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENP
: .:::::::::::..::.:.::::::::.:::.::: ::..::::. :::::::
XP_011 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60
pF1KB9 FKDKKP-CIIL
:..:: : ::
XP_011 FREKKFFCAIL
70
>>XP_016876865 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 300 init1: 300 opt: 306 Z-score: 454.0 bits: 87.8 E(85289): 1.5e-18
Smith-Waterman score: 306; 72.7% identity (90.9% similar) in 66 aa overlap (4-68:6-71)
10 20 30 40 50
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENP
: .:::::::::::..::.:.::::::::.:::.::: ::..::::. :::::::
XP_016 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60
pF1KB9 FKDKKP-CIIL
:..:: : ::
XP_016 FREKKFFCAIL
70
>>XP_006720236 (OMIM: 606981) PREDICTED: guanine nucleot (71 aa)
initn: 300 init1: 300 opt: 306 Z-score: 454.0 bits: 87.8 E(85289): 1.5e-18
Smith-Waterman score: 306; 72.7% identity (90.9% similar) in 66 aa overlap (4-68:6-71)
10 20 30 40 50
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENP
: .:::::::::::..::.:.::::::::.:::.::: ::..::::. :::::::
XP_006 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60
pF1KB9 FKDKKP-CIIL
:..:: : ::
XP_006 FREKKFFCAIL
70
>>NP_444292 (OMIM: 606981) guanine nucleotide-binding pr (71 aa)
initn: 300 init1: 300 opt: 306 Z-score: 454.0 bits: 87.8 E(85289): 1.5e-18
Smith-Waterman score: 306; 72.7% identity (90.9% similar) in 66 aa overlap (4-68:6-71)
10 20 30 40 50
pF1KB9 MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPASENP
: .:::::::::::..::.:.::::::::.:::.::: ::..::::. :::::::
NP_444 MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENP
10 20 30 40 50 60
60
pF1KB9 FKDKKP-CIIL
:..:: : ::
NP_444 FREKKFFCAIL
70
68 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:52:48 2016 done: Fri Nov 4 18:52:49 2016
Total Scan time: 3.800 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]