Result of FASTA (omim) for
pF1KB9783
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9783, 251 aa
1>>>pF1KB9783 251 - 251 aa - 251 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0878+/-0.000274; mu= 8.1212+/- 0.017
mean_var=138.9454+/-27.423, 0's: 0 Z-trim(123.3): 31 B-trim: 335 in 1/54
Lambda= 0.108806
statistics sampled from 42772 (42806) to 42772 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.502), width: 16
Scan time: 8.370
The best scores are: opt bits E(85289)
NP_783640 (OMIM: 608457) chromobox protein homolog ( 251) 1719 280.2 2.4e-75
XP_016884168 (OMIM: 608457) PREDICTED: chromobox p ( 250) 1702 277.5 1.5e-74
XP_006724237 (OMIM: 608457) PREDICTED: chromobox p ( 259) 1693 276.1 4.2e-74
XP_006724238 (OMIM: 608457) PREDICTED: chromobox p ( 258) 1676 273.4 2.7e-73
XP_006724240 (OMIM: 608457) PREDICTED: chromobox p ( 192) 764 130.2 2.7e-30
XP_006724239 (OMIM: 608457) PREDICTED: chromobox p ( 200) 764 130.2 2.7e-30
XP_005261470 (OMIM: 608457) PREDICTED: chromobox p ( 158) 559 97.9 1.1e-20
XP_006724241 (OMIM: 608457) PREDICTED: chromobox p ( 166) 540 95.0 9.1e-20
XP_011528327 (OMIM: 608457) PREDICTED: chromobox p ( 165) 533 93.9 1.9e-19
NP_003646 (OMIM: 603079) E3 SUMO-protein ligase CB ( 560) 447 80.8 5.8e-15
NP_116036 (OMIM: 602770,613080) chromobox protein ( 211) 345 64.4 1.8e-10
NP_005180 (OMIM: 602770,613080) chromobox protein ( 532) 348 65.2 2.6e-10
XP_011523684 (OMIM: 602770,613080) PREDICTED: chro ( 586) 348 65.3 2.9e-10
NP_001120700 (OMIM: 604511) chromobox protein homo ( 185) 185 39.3 0.0059
NP_006798 (OMIM: 604511) chromobox protein homolog ( 185) 185 39.3 0.0059
XP_005249668 (OMIM: 604477) PREDICTED: chromobox p ( 183) 182 38.8 0.0081
NP_057671 (OMIM: 604477) chromobox protein homolog ( 183) 182 38.8 0.0081
NP_009207 (OMIM: 604477) chromobox protein homolog ( 183) 182 38.8 0.0081
NP_001120794 (OMIM: 604478) chromobox protein homo ( 191) 182 38.8 0.0084
NP_001120793 (OMIM: 604478) chromobox protein homo ( 191) 182 38.8 0.0084
NP_036249 (OMIM: 604478) chromobox protein homolog ( 191) 182 38.8 0.0084
>>NP_783640 (OMIM: 608457) chromobox protein homolog 7 [ (251 aa)
initn: 1719 init1: 1719 opt: 1719 Z-score: 1473.6 bits: 280.2 E(85289): 2.4e-75
Smith-Waterman score: 1719; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 GAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_783 DVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA
190 200 210 220 230 240
250
pF1KB9 EGFFRDRSGKF
:::::::::::
NP_783 EGFFRDRSGKF
250
>>XP_016884168 (OMIM: 608457) PREDICTED: chromobox prote (250 aa)
initn: 1378 init1: 1378 opt: 1702 Z-score: 1459.2 bits: 277.5 E(85289): 1.5e-74
Smith-Waterman score: 1702; 99.6% identity (99.6% similar) in 251 aa overlap (1-251:1-250)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
XP_016 DVLQAAGEWEPAAQPPEEE-DADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA
190 200 210 220 230
250
pF1KB9 EGFFRDRSGKF
:::::::::::
XP_016 EGFFRDRSGKF
240 250
>>XP_006724237 (OMIM: 608457) PREDICTED: chromobox prote (259 aa)
initn: 1705 init1: 1309 opt: 1693 Z-score: 1451.3 bits: 276.1 E(85289): 4.2e-74
Smith-Waterman score: 1693; 96.9% identity (96.9% similar) in 259 aa overlap (1-251:1-259)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 --------EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YGVLGTAGEERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 SPEGVVKAGAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPEGVVKAGAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRREL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 FLQEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FLQEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITV
190 200 210 220 230 240
240 250
pF1KB9 TFREAQAAEGFFRDRSGKF
:::::::::::::::::::
XP_006 TFREAQAAEGFFRDRSGKF
250
>>XP_006724238 (OMIM: 608457) PREDICTED: chromobox prote (258 aa)
initn: 1364 init1: 968 opt: 1676 Z-score: 1436.9 bits: 273.4 E(85289): 2.7e-73
Smith-Waterman score: 1676; 96.5% identity (96.5% similar) in 259 aa overlap (1-251:1-258)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 --------EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSG
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YGVLGTAGEERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 SPEGVVKAGAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRREL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPEGVVKAGAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRREL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 FLQEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITV
::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
XP_006 FLQEPPAPDVLQAAGEWEPAAQPPEEE-DADLAEGPPPWTPALPSSEVTVTDITANSITV
190 200 210 220 230
240 250
pF1KB9 TFREAQAAEGFFRDRSGKF
:::::::::::::::::::
XP_006 TFREAQAAEGFFRDRSGKF
240 250
>>XP_006724240 (OMIM: 608457) PREDICTED: chromobox prote (192 aa)
initn: 762 init1: 762 opt: 764 Z-score: 665.0 bits: 130.2 E(85289): 2.7e-30
Smith-Waterman score: 1189; 76.5% identity (76.5% similar) in 251 aa overlap (1-251:1-192)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
::::::::::::::::::::::
XP_006 EERDRASGYRKRGPKPKRLLLQ--------------------------------------
70 80
130 140 150 160 170 180
pF1KB9 GAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAP
:::::::::::::::::::::::::::::::::::::::
XP_006 ---------------------PRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAP
90 100 110 120
190 200 210 220 230 240
pF1KB9 DVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA
130 140 150 160 170 180
250
pF1KB9 EGFFRDRSGKF
:::::::::::
XP_006 EGFFRDRSGKF
190
>>XP_006724239 (OMIM: 608457) PREDICTED: chromobox prote (200 aa)
initn: 1158 init1: 762 opt: 764 Z-score: 664.8 bits: 130.2 E(85289): 2.7e-30
Smith-Waterman score: 1163; 74.1% identity (74.1% similar) in 259 aa overlap (1-251:1-200)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 --------EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSG
::::::::::::::::::::::
XP_006 YGVLGTAGEERDRASGYRKRGPKPKRLLLQ------------------------------
70 80 90
120 130 140 150 160 170
pF1KB9 SPEGVVKAGAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRREL
:::::::::::::::::::::::::::::::
XP_006 -----------------------------PRKAHKYLRLSRKKFPPRGPNLESHSHRREL
100 110 120
180 190 200 210 220 230
pF1KB9 FLQEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FLQEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITV
130 140 150 160 170 180
240 250
pF1KB9 TFREAQAAEGFFRDRSGKF
:::::::::::::::::::
XP_006 TFREAQAAEGFFRDRSGKF
190 200
>>XP_005261470 (OMIM: 608457) PREDICTED: chromobox prote (158 aa)
initn: 559 init1: 559 opt: 559 Z-score: 492.3 bits: 97.9 E(85289): 1.1e-20
Smith-Waterman score: 882; 62.9% identity (62.9% similar) in 251 aa overlap (1-251:1-158)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
::::::::::::::::::::::
XP_005 EERDRASGYRKRGPKPKRLLLQ--------------------------------------
70 80
130 140 150 160 170 180
pF1KB9 GAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRRELFLQEPPAP
:::::
XP_005 -------------------------------------------------------EPPAP
190 200 210 220 230 240
pF1KB9 DVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTFREAQAA
90 100 110 120 130 140
250
pF1KB9 EGFFRDRSGKF
:::::::::::
XP_005 EGFFRDRSGKF
150
>>XP_006724241 (OMIM: 608457) PREDICTED: chromobox prote (166 aa)
initn: 936 init1: 540 opt: 540 Z-score: 475.9 bits: 95.0 E(85289): 9.1e-20
Smith-Waterman score: 856; 61.0% identity (61.0% similar) in 259 aa overlap (1-251:1-166)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 --------EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSG
::::::::::::::::::::::
XP_006 YGVLGTAGEERDRASGYRKRGPKPKRLLLQ------------------------------
70 80 90
120 130 140 150 160 170
pF1KB9 SPEGVVKAGAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRREL
XP_006 ------------------------------------------------------------
180 190 200 210 220 230
pF1KB9 FLQEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ---EPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITV
100 110 120 130 140
240 250
pF1KB9 TFREAQAAEGFFRDRSGKF
:::::::::::::::::::
XP_006 TFREAQAAEGFFRDRSGKF
150 160
>>XP_011528327 (OMIM: 608457) PREDICTED: chromobox prote (165 aa)
initn: 892 init1: 410 opt: 533 Z-score: 470.0 bits: 93.9 E(85289): 1.9e-19
Smith-Waterman score: 839; 60.6% identity (60.6% similar) in 259 aa overlap (1-251:1-165)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 --------EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSG
::::::::::::::::::::::
XP_011 YGVLGTAGEERDRASGYRKRGPKPKRLLLQ------------------------------
70 80 90
120 130 140 150 160 170
pF1KB9 SPEGVVKAGAPELVDKGPLVPTLPFPLRKPRKAHKYLRLSRKKFPPRGPNLESHSHRREL
XP_011 ------------------------------------------------------------
180 190 200 210 220 230
pF1KB9 FLQEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITV
:::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
XP_011 ---EPPAPDVLQAAGEWEPAAQPPEEE-DADLAEGPPPWTPALPSSEVTVTDITANSITV
100 110 120 130 140
240 250
pF1KB9 TFREAQAAEGFFRDRSGKF
:::::::::::::::::::
XP_011 TFREAQAAEGFFRDRSGKF
150 160
>>NP_003646 (OMIM: 603079) E3 SUMO-protein ligase CBX4 [ (560 aa)
initn: 505 init1: 426 opt: 447 Z-score: 389.7 bits: 80.8 E(85289): 5.8e-15
Smith-Waterman score: 447; 39.0% identity (63.8% similar) in 213 aa overlap (1-207:1-206)
10 20 30 40 50 60
pF1KB9 MELSAIGEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEK
::: :.::.:::::::.:::.:::.:::::::.:: :::.::::::.::::::..:....
NP_003 MELPAVGEHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 EERDRASGYRKRGPKPKRLLLQRLYSMDLRSSHKAKGKEKLCFSLTCPLGSGSPEGVVKA
:.... :::::::::: :..: : :. : . . : :. .: ..
NP_003 ERQEQLMGYRKRGPKPKPLVVQ--VPTFARRSNVLTGLQDSSTDNRAKLDLGA-QGKGQG
70 80 90 100 110
130 140 150 160 170
pF1KB9 GAPELVDKG--PLVPTLPFPLRKP----RKAHKYLRLSRKKFPPRGPNLESHSHRRELFL
:: .: : :: .... : .:. :: : :. . .. . .
NP_003 HQYELNSKKHHQYQPHSKERAGKPPPPGKSGKYYYQLNSKKHHPYQPDPKMYDLQYQGGH
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 QEPPAPDVLQAAGEWEPAAQPPEEEADADLAEGPPPWTPALPSSEVTVTDITANSITVTF
.: :.: . ... ..::.. :.. :.:
NP_003 KEAPSPTCPDLGAK----SHPPDKWAQGAGAKGYLGAVKPLAGAAGAPGKGSEKGPPNGM
180 190 200 210 220 230
240 250
pF1KB9 REAQAAEGFFRDRSGKF
NP_003 MPAPKEAVTGNGIGGKMKIVKNKNKNGRIVIVMSKYMENGMQAVKIKSGEVAEGEARSPS
240 250 260 270 280 290
251 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:05:39 2016 done: Fri Nov 4 20:05:40 2016
Total Scan time: 8.370 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]