Result of FASTA (ccds) for
pF1KB9788
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9788, 195 aa
1>>>pF1KB9788 195 - 195 aa - 195 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5900+/-0.000787; mu= 11.5437+/- 0.047
mean_var=64.5588+/-12.990, 0's: 0 Z-trim(107.8): 20 B-trim: 298 in 1/50
Lambda= 0.159623
statistics sampled from 9763 (9782) to 9763 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.3), width: 16
Scan time: 2.110
The best scores are: opt bits E(32554)
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 1286 304.5 2.7e-83
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 725 175.3 2e-44
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 717 173.4 7.3e-44
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 715 173.0 1e-43
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 715 173.0 1e-43
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 709 171.6 2.6e-43
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 708 171.4 3.1e-43
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 699 169.3 1.3e-42
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 692 167.7 4e-42
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 685 166.1 1.2e-41
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 683 165.6 1.7e-41
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 681 165.2 2.3e-41
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 672 163.1 9.7e-41
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 667 161.9 2.2e-40
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 368 93.1 1.3e-19
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 334 85.2 2.6e-17
>>CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 (195 aa)
initn: 1286 init1: 1286 opt: 1286 Z-score: 1608.9 bits: 304.5 E(32554): 2.7e-83
Smith-Waterman score: 1286; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KB9 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN
130 140 150 160 170 180
190
pF1KB9 MQERLRSKDRDLGSS
:::::::::::::::
CCDS64 MQERLRSKDRDLGSS
190
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 725 init1: 725 opt: 725 Z-score: 910.9 bits: 175.3 E(32554): 2e-44
Smith-Waterman score: 725; 58.7% identity (80.4% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR
::: : :: :... ::. . ::::::::.:.: .: .:.:: :: ::::: :::::.:::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE
.::: :.:.:::...::::::.:: :.:: :: :::::...::... : :.:::. ::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN
.:..: :: :. . :..:.::: : .:: :.::: ::::::: :::.:: .:::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
190
pF1KB9 MQERLRSKDRDLGSS
.:.::: ::
CCDS64 LQKRLRRKD
>>CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 (189 aa)
initn: 733 init1: 717 opt: 717 Z-score: 900.9 bits: 173.4 E(32554): 7.3e-44
Smith-Waterman score: 717; 59.3% identity (79.9% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR
::: : ::.:::. ::. .::::::::.:.: .: .:.:: :::::::: :::::.::.
CCDS65 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE
:::: .:.:::...::::::.:: :.:: :. :::: . ::::... : :::. ::
CCDS65 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN
.:..: :: :: . :..:.::: : .:: :::::.::::::: :::.:. :: :
CCDS65 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
130 140 150 160 170 180
190
pF1KB9 MQERLRSKDRDLGSS
.:.::.::.
CCDS65 LQKRLKSKE
>>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa)
initn: 699 init1: 453 opt: 715 Z-score: 898.5 bits: 173.0 E(32554): 1e-43
Smith-Waterman score: 715; 60.8% identity (79.9% similar) in 189 aa overlap (1-189:1-188)
10 20 30 40 50 60
pF1KB9 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR
::: : ::.::.. : . :.::::::.:.: :: ::.:: :::::: : :::::.::
CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE
:::: :.:.:::... :::::.::::.:: :. :::::. ::::...: :.:::. ::
CCDS65 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
70 80 90 100 110
130 140 150 160 170 180
pF1KB9 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN
.:..: :: :. . :..:.::: : .:::::::: ::::::: :::.:. ::::
CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
120 130 140 150 160 170
190
pF1KB9 MQERLRSKDRDLGSS
.:: ::::.
CCDS65 LQESLRSKE
180
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 715 init1: 715 opt: 715 Z-score: 898.4 bits: 173.0 E(32554): 1e-43
Smith-Waterman score: 715; 58.2% identity (79.4% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR
::: : :: :::. . . . ::::::::.:.: .: ::... :: ::::: :::::.::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE
:::: :.:.:::...::::::.:: :.:: :. :::.:. ::::...: :.:::. ::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN
.:..: :: .. . ::.:.::: : .:: ::::: ::::::: :::.:. ::.:
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
190
pF1KB9 MQERLRSKDRDLGSS
.::::: :.
CCDS65 LQERLRRKE
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 709 init1: 709 opt: 709 Z-score: 890.9 bits: 171.6 E(32554): 2.6e-43
Smith-Waterman score: 709; 58.2% identity (78.8% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR
::: : :: :... ::. . ::::::::.:.: .: .:.:: :: ::: : :::::.::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE
::.: : :.:::...::::::.:: :.:: :: :::::...::... : :.:::. ::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN
.:..: :: :. . :..:.::: : .:: ::::: ::::::: :::.:: .:::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
190
pF1KB9 MQERLRSKDRDLGSS
.:.::: ::
CCDS64 LQKRLRRKD
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 708 init1: 708 opt: 708 Z-score: 889.7 bits: 171.4 E(32554): 3.1e-43
Smith-Waterman score: 708; 57.7% identity (79.9% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR
::: : :: :... ::. . ::::::::.:.: .: .:.:: :: ::::: :::::.::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE
.::: :.:.::....::::::.:: :.:: :: :::::...::... : :.:::..::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN
.:..: :: :. . :..:.::: : .:: ::::: ::::::: :::.:: .:::
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
190
pF1KB9 MQERLRSKDRDLGSS
.:. :: ::
CCDS65 LQKILRRKD
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 699 init1: 699 opt: 699 Z-score: 878.5 bits: 169.3 E(32554): 1.3e-42
Smith-Waterman score: 699; 57.1% identity (78.3% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR
::: : :. :::. : . ::::.: :.:.: .: ::.:. :::::::: :::::.::.
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE
:::: :.:.:::...::::::.:: :.:: :. :::::. :::.... : ::.. ::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN
.:..: :: :. . :....::: : .:: ::::: ::::::: :::.:: .:::
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
190
pF1KB9 MQERLRSKDRDLGSS
.:.::: ::
CCDS65 LQKRLRRKD
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 706 init1: 692 opt: 692 Z-score: 869.8 bits: 167.7 E(32554): 4e-42
Smith-Waterman score: 692; 56.6% identity (78.8% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR
::: : :: :... ::. . ::::::::.:.: .: .:.:: :: ::::: :::::.::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE
:::: :.:.:::...::::::.:: :.:: :. :::.:...::... : :.:::. ::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN
.:..: :: :. . :....::: : .:: ::::: ::::::: :::.:. ::
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
130 140 150 160 170 180
190
pF1KB9 MQERLRSKDRDLGSS
.::::: :.
CCDS64 FQERLRRKE
>>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa)
initn: 685 init1: 685 opt: 685 Z-score: 861.1 bits: 166.1 E(32554): 1.2e-41
Smith-Waterman score: 685; 55.6% identity (78.8% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB9 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR
:: : :: .... ::. . ::::::::.:.: .: .:.:: :: ::::: :::::..::
CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE
::.: : :.::....::::::.:: :.:: :: :::::...::... : :.:::. ::
CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN
.:..: :: :. . :..:.::: : .:: ::::: ::::::: :::.:. .:::
CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
190
pF1KB9 MQERLRSKDRDLGSS
... :: ::
CCDS34 LKKGLRRKD
195 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:57:02 2016 done: Fri Nov 4 18:57:02 2016
Total Scan time: 2.110 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]