FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9794, 217 aa
  1>>>pF1KB9794 217 - 217 aa - 217 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1575+/-0.000633; mu= 10.4552+/- 0.038
 mean_var=85.2134+/-16.832, 0's: 0 Z-trim(113.0): 10  B-trim: 49 in 1/52
 Lambda= 0.138938
 statistics sampled from 13670 (13676) to 13670 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.42), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS3393.1 BLOC1S4 gene_id:55330|Hs108|chr4        ( 217) 1450 299.5 1.1e-81
CCDS13432.2 BCAS4 gene_id:55653|Hs108|chr20        ( 203)  408 90.6 7.4e-19
CCDS33487.1 BCAS4 gene_id:55653|Hs108|chr20        ( 211)  327 74.4 5.9e-14


>>CCDS3393.1 BLOC1S4 gene_id:55330|Hs108|chr4             (217 aa)
 initn: 1450 init1: 1450 opt: 1450  Z-score: 1580.3  bits: 299.5 E(32554): 1.1e-81
Smith-Waterman score: 1450; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KB9 MEGSFSDGGALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAPGRDLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MEGSFSDGGALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAPGRDLPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LRRAAAGYAACLLPGAGARPEVEALDASLEDLLTRVDEFVGMLDMLRGDSSHVVSEGVPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LRRAAAGYAACLLPGAGARPEVEALDASLEDLLTRVDEFVGMLDMLRGDSSHVVSEGVPR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 IHAKAAEMRRIYSRIDRLEAFVRMVGGRVARMEEQVTKAEAELGTFPRAFKKLLHTMNVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IHAKAAEMRRIYSRIDRLEAFVRMVGGRVARMEEQVTKAEAELGTFPRAFKKLLHTMNVP
              130       140       150       160       170       180

              190       200       210       
pF1KB9 SLFSKSAPSRPQQAGYEAPVLFRTEDYFPCCSERPQL
       :::::::::::::::::::::::::::::::::::::
CCDS33 SLFSKSAPSRPQQAGYEAPVLFRTEDYFPCCSERPQL
              190       200       210       

>>CCDS13432.2 BCAS4 gene_id:55653|Hs108|chr20             (203 aa)
 initn: 384 init1: 315 opt: 408  Z-score: 452.0  bits: 90.6 E(32554): 7.4e-19
Smith-Waterman score: 408; 42.9% identity (74.0% similar) in 154 aa overlap (57-209:37-186)

         30        40        50        60         70        80     
pF1KB9 SGDSGTVSQSHSSASGPWEDEGAEDGAPGRDLPL-LRRAAAGYAACLLPGAGARPEVEAL
                                     : :  .: .:   :  : :  ::  :.. .
CCDS13 GAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGA--EAKEV
         10        20        30        40        50          60    

          90       100       110       120       130       140     
pF1KB9 DASLEDLLTRVDEFVGMLDMLRGDSSHVVSEGVPRIHAKAAEMRRIYSRIDRLEAFVRMV
       . ..: .: :..:: .. :..:.:.:... :..: ..:: .::: ::...:::::::.::
CCDS13 EETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAFVKMV
           70        80        90       100       110       120    

         150       160       170       180       190       200     
pF1KB9 GGRVARMEEQVTKAEAELGTFPRAFKKLLHTMNVPSLFSKSAPSRPQQAGYEAPVLFRTE
       : .:: .: .: .:: . :.::.:... : . ..::. .:: :. :  . :: :.:.:::
CCDS13 GHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNKS-PA-PVPVTYELPTLYRTE
          130       140       150       160         170       180  

         210                
pF1KB9 DYFPCCSERPQL         
       ::::                 
CCDS13 DYFPVDAGEAQHHPRTCPRPL
            190       200   

>>CCDS33487.1 BCAS4 gene_id:55653|Hs108|chr20             (211 aa)
 initn: 293 init1: 272 opt: 327  Z-score: 364.0  bits: 74.4 E(32554): 5.9e-14
Smith-Waterman score: 327; 38.8% identity (71.2% similar) in 139 aa overlap (57-190:37-173)

         30        40        50        60         70        80     
pF1KB9 SGDSGTVSQSHSSASGPWEDEGAEDGAPGRDLPL-LRRAAAGYAACLLPGAGARPEVEAL
                                     : :  .: .:   :  : :  ::  :.. .
CCDS33 GAPRPGRNHGLPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGA--EAKEV
         10        20        30        40        50          60    

          90       100       110       120       130       140     
pF1KB9 DASLEDLLTRVDEFVGMLDMLRGDSSHVVSEGVPRIHAKAAEMRRIYSRIDRLEAFVRMV
       . ..: .: :..:: .. :..:.:.:... :..: ..:: .::: ::...:::::::.::
CCDS33 EETIEGMLLRLEEFCSLADLIRSDTSQILEENIPVLKAKLTEMRGIYAKVDRLEAFVKMV
           70        80        90       100       110       120    

         150       160       170       180           190       200 
pF1KB9 GGRVARMEEQVTKAEAELGTFPRAFKKLLHTMNVPSL----FSKSAPSRPQQAGYEAPVL
       : .:: .: .: .:: . :.::.:... : . ..::.     : . :.:           
CCDS33 GHHVAFLEADVLQAERDHGAFPQALRRWLGSAGLPSFRNVECSGTIPARCNLRLPGSSDS
          130       140       150       160       170       180    

             210                  
pF1KB9 FRTEDYFPCCSERPQL           
                                  
CCDS33 PASASQVAGITEVTCTGARDVRAAHTV
          190       200       210 




217 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:59:03 2016 done: Fri Nov  4 18:59:04 2016
 Total Scan time:  2.440 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]