Result of FASTA (ccds) for
pF1KB9801
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9801, 185 aa
1>>>pF1KB9801 185 - 185 aa - 185 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3015+/-0.000664; mu= 15.2337+/- 0.040
mean_var=95.0636+/-19.547, 0's: 0 Z-trim(112.6): 51 B-trim: 600 in 1/50
Lambda= 0.131543
statistics sampled from 13242 (13296) to 13242 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.408), width: 16
Scan time: 1.840
The best scores are: opt bits E(32554)
CCDS14775.1 TGIF2LY gene_id:90655|Hs108|chrY ( 185) 1248 245.9 1.1e-65
CCDS14459.1 TGIF2LX gene_id:90316|Hs108|chrX ( 241) 983 195.7 1.8e-50
CCDS11834.1 TGIF1 gene_id:7050|Hs108|chr18 ( 401) 383 82.1 4.8e-16
CCDS11835.1 TGIF1 gene_id:7050|Hs108|chr18 ( 252) 379 81.1 5.8e-16
CCDS11833.1 TGIF1 gene_id:7050|Hs108|chr18 ( 272) 379 81.1 6.2e-16
CCDS11832.1 TGIF1 gene_id:7050|Hs108|chr18 ( 286) 379 81.2 6.4e-16
CCDS13278.1 TGIF2 gene_id:60436|Hs108|chr20 ( 237) 369 79.2 2.1e-15
>>CCDS14775.1 TGIF2LY gene_id:90655|Hs108|chrY (185 aa)
initn: 1248 init1: 1248 opt: 1248 Z-score: 1293.0 bits: 245.9 E(32554): 1.1e-65
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KB9 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IIGHKTGKDAHATHLQSTEASVPAKSGPVVQTMYKACPCGPCQRARCQERSNQIRSRPLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 IIGHKTGKDAHATHLQSTEASVPAKSGPVVQTMYKACPCGPCQRARCQERSNQIRSRPLA
130 140 150 160 170 180
pF1KB9 RSSPE
:::::
CCDS14 RSSPE
>>CCDS14459.1 TGIF2LX gene_id:90316|Hs108|chrX (241 aa)
initn: 972 init1: 972 opt: 983 Z-score: 1019.7 bits: 195.7 E(32554): 1.8e-50
Smith-Waterman score: 983; 84.9% identity (91.1% similar) in 179 aa overlap (1-178:1-179)
10 20 30 40 50 60
pF1KB9 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDP
:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
CCDS14 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP
70 80 90 100 110 120
130 140 150 160 170
pF1KB9 IIGHKTGKDAHATHLQSTEASVPAKSGPVVQTMYKACPCGPCQRAR-CQERSNQIRSRPL
:::::::::::::::::::::::::::: .. : : ... .:.. . .: :
CCDS14 IIGHKTGKDAHATHLQSTEASVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPS
130 140 150 160 170 180
180
pF1KB9 ARSSPE
CCDS14 QKLTGIAQPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPN
190 200 210 220 230 240
>>CCDS11834.1 TGIF1 gene_id:7050|Hs108|chr18 (401 aa)
initn: 369 init1: 351 opt: 383 Z-score: 401.6 bits: 82.1 E(32554): 4.8e-16
Smith-Waterman score: 383; 40.4% identity (68.1% similar) in 166 aa overlap (5-161:120-277)
10 20 30
pF1KB9 MEAAADGPAETQSPVE--KDSPAKTQSPAQDTSI
:.::: . .: : : . : ..: .
CCDS11 QPRALSPELGTKAGPRRPHRWELPRSPSQGAQGPAPRRRLLETMKGIVAASGSETEDEDS
90 100 110 120 130 140
40 50 60 70 80
pF1KB9 MS-----RNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLS
:. ..: .: :..:.:::: :::.:::::.:.::..:::::.:: .::
CCDS11 MDIPLDLSSSAGSG--------KRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLS
150 160 170 180 190 200
90 100 110 120 130 140
pF1KB9 EKTNLSLLRISNWFINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTEASVPAKS-
..:.:: :.. :::::::::.:::::.. .:: . . :. .. .:.:. . :.
CCDS11 QQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNF
210 220 230 240 250 260
150 160 170 180
pF1KB9 GPVVQ-TMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
:... : ...: ::
CCDS11 MPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSV
270 280 290 300 310 320
>>CCDS11835.1 TGIF1 gene_id:7050|Hs108|chr18 (252 aa)
initn: 369 init1: 351 opt: 379 Z-score: 400.0 bits: 81.1 E(32554): 5.8e-16
Smith-Waterman score: 379; 48.2% identity (78.9% similar) in 114 aa overlap (50-161:15-128)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
CCDS11 MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTE
:.:: .::..:.:: :.. :::::::::.:::::.. .:: . . :. .. .:.:
CCDS11 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 ASVPAKS-GPVVQ-TMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
. . :. :... : ...: ::
CCDS11 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
110 120 130 140 150 160
>>CCDS11833.1 TGIF1 gene_id:7050|Hs108|chr18 (272 aa)
initn: 369 init1: 351 opt: 379 Z-score: 399.6 bits: 81.1 E(32554): 6.2e-16
Smith-Waterman score: 379; 48.2% identity (78.9% similar) in 114 aa overlap (50-161:35-148)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
CCDS11 KGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40 50 60
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTE
:.:: .::..:.:: :.. :::::::::.:::::.. .:: . . :. .. .:.:
CCDS11 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
70 80 90 100 110 120
140 150 160 170 180
pF1KB9 ASVPAKS-GPVVQ-TMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
. . :. :... : ...: ::
CCDS11 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
130 140 150 160 170 180
>>CCDS11832.1 TGIF1 gene_id:7050|Hs108|chr18 (286 aa)
initn: 369 init1: 351 opt: 379 Z-score: 399.3 bits: 81.2 E(32554): 6.4e-16
Smith-Waterman score: 379; 48.2% identity (78.9% similar) in 114 aa overlap (50-161:49-162)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
CCDS11 QGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
20 30 40 50 60 70
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDPIIGHKTGKDAHATHLQSTE
:.:: .::..:.:: :.. :::::::::.:::::.. .:: . . :. .. .:.:
CCDS11 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
80 90 100 110 120 130
140 150 160 170 180
pF1KB9 ASVPAKS-GPVVQ-TMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
. . :. :... : ...: ::
CCDS11 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
140 150 160 170 180 190
>>CCDS13278.1 TGIF2 gene_id:60436|Hs108|chr20 (237 aa)
initn: 352 init1: 352 opt: 369 Z-score: 390.1 bits: 79.2 E(32554): 2.1e-15
Smith-Waterman score: 369; 52.2% identity (75.2% similar) in 113 aa overlap (50-159:18-130)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:.::.:::: :::::::::.: ::..::::
CCDS13 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQ
:.:: :: .::::.:.: :::::::::.:::::.. .:: :... :: . .. .
CCDS13 EQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPR
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 STEASVPAKSGPVVQTMYKACPCGPCQRARCQERSNQIRSRPLARSSPE
.. :: : : :. .. . :
CCDS13 GSSPSVLAVSVPAPTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTLL
110 120 130 140 150 160
185 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:04:09 2016 done: Fri Nov 4 19:04:09 2016
Total Scan time: 1.840 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]