FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9804, 223 aa
  1>>>pF1KB9804 223 - 223 aa - 223 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0547+/-0.00082; mu= 11.1708+/- 0.050
 mean_var=91.3892+/-17.651, 0's: 0 Z-trim(109.1): 8  B-trim: 0 in 0/51
 Lambda= 0.134161
 statistics sampled from 10625 (10627) to 10625 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.326), width:  16
 Scan time:  2.200

The best scores are:                                      opt bits E(32554)
CCDS31261.1 C10orf62 gene_id:414157|Hs108|chr10    ( 223) 1481 296.2 1.1e-80


>>CCDS31261.1 C10orf62 gene_id:414157|Hs108|chr10         (223 aa)
 initn: 1481 init1: 1481 opt: 1481  Z-score: 1562.0  bits: 296.2 E(32554): 1.1e-80
Smith-Waterman score: 1481; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)

               10        20        30        40        50        60
pF1KB9 MLWVQRKRRRKETSECPSDKDKSPESHKAKNESWIKSHFSRLSEEKLALDNNASASGNAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLWVQRKRRRKETSECPSDKDKSPESHKAKNESWIKSHFSRLSEEKLALDNNASASGNAT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QTESGSEEVSSTVHIETFTTRHGEVGSALHRESFTSRQKTSGPSVIQEIHQESGKAPSTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QTESGSEEVSSTVHIETFTTRHGEVGSALHRESFTSRQKTSGPSVIQEIHQESGKAPSTD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EATWAAVAACTKEIDTQGRHLAHSMLQRAIAYQHSGHLESKDINQEELRALEEVEMKLQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EATWAAVAACTKEIDTQGRHLAHSMLQRAIAYQHSGHLESKDINQEELRALEEVEMKLQK
              130       140       150       160       170       180

              190       200       210       220   
pF1KB9 NFLTQRENTIAGANHTHTFYGHSHHSHHGHPSHQSHSLPNRRH
       :::::::::::::::::::::::::::::::::::::::::::
CCDS31 NFLTQRENTIAGANHTHTFYGHSHHSHHGHPSHQSHSLPNRRH
              190       200       210       220   




223 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:06:33 2016 done: Fri Nov  4 19:06:34 2016
 Total Scan time:  2.200 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]