Result of FASTA (ccds) for
pF1KB9806
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9806, 226 aa
1>>>pF1KB9806 226 - 226 aa - 226 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4423+/-0.00108; mu= 2.4078+/- 0.066
mean_var=229.4515+/-44.464, 0's: 0 Z-trim(111.0): 37 B-trim: 0 in 0/52
Lambda= 0.084670
statistics sampled from 12028 (12056) to 12028 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.37), width: 16
Scan time: 2.370
The best scores are: opt bits E(32554)
CCDS4635.1 HIST1H1B gene_id:3009|Hs108|chr6 ( 226) 1372 179.6 1.4e-45
CCDS4586.1 HIST1H1E gene_id:3008|Hs108|chr6 ( 219) 1098 146.1 1.6e-35
CCDS4597.1 HIST1H1D gene_id:3007|Hs108|chr6 ( 221) 1020 136.6 1.2e-32
CCDS4577.1 HIST1H1C gene_id:3006|Hs108|chr6 ( 213) 978 131.5 4.2e-31
CCDS4569.1 HIST1H1A gene_id:3024|Hs108|chr6 ( 215) 823 112.5 2.1e-25
CCDS34349.1 HIST1H1T gene_id:3010|Hs108|chr6 ( 207) 528 76.5 1.4e-14
>>CCDS4635.1 HIST1H1B gene_id:3009|Hs108|chr6 (226 aa)
initn: 1372 init1: 1372 opt: 1372 Z-score: 931.7 bits: 179.6 E(32554): 1.4e-45
Smith-Waterman score: 1372; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KB9 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAA
130 140 150 160 170 180
190 200 210 220
pF1KB9 AKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
190 200 210 220
>>CCDS4586.1 HIST1H1E gene_id:3008|Hs108|chr6 (219 aa)
initn: 972 init1: 652 opt: 1098 Z-score: 751.0 bits: 146.1 E(32554): 1.6e-35
Smith-Waterman score: 1098; 84.7% identity (91.0% similar) in 222 aa overlap (1-220:1-218)
10 20 30 40 50 60
pF1KB9 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
::::::: :.:::.::.:.:::: :. ::::::::.::::::::::::::::::.:.
CCDS45 MSETAPAAPAAPAPAEKTPVKKKARKS---AGAAKRKASGPPVSELITKAVAASKERSGV
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
60 70 80 90 100 110
130 140 150 160 170
pF1KB9 PKAKKAGAAKAKKPAGAT--PKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAK
:::::::::::::::::. :::: :: ::..:::::::::::::. : ::::::::
CCDS45 PKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAK
120 130 140 150 160 170
180 190 200 210 220
pF1KB9 AAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
:: ::::: ::::: :::::::::::.::::::::: : :::
CCDS45 AA-KPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK
180 190 200 210
>>CCDS4597.1 HIST1H1D gene_id:3007|Hs108|chr6 (221 aa)
initn: 682 init1: 682 opt: 1020 Z-score: 699.4 bits: 136.6 E(32554): 1.2e-32
Smith-Waterman score: 1020; 78.3% identity (89.1% similar) in 230 aa overlap (1-226:1-221)
10 20 30 40 50 60
pF1KB9 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
:::::: . :::.::.:.:::: : ::: :.::::.::::::::::::::::::.:.
CCDS45 MSETAPLAPTIPAPAEKTPVKKKAKK--AGATAGKRKASGPPVSELITKAVAASKERSGV
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS45 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEGK
60 70 80 90 100 110
130 140 150 160 170
pF1KB9 PKAKKAGAAKAKKPAGATPKKAKKAAGA---KKAVKKTPKKAKKPA-AAGVKKVAKSPKK
:::::::::: .:::::. :: ::.::: ::..::::::.:::: :::.:::::: ::
CCDS45 PKAKKAGAAKPRKPAGAA-KKPKKVAGAATPKKSIKKTPKKVKKPATAAGTKKVAKSAKK
120 130 140 150 160 170
180 190 200 210 220
pF1KB9 AKAAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
.:. .::::.::::: :: :: :::::::..:::..:::::: :::
CCDS45 VKTP-QPKKAAKSPAKAKA--PK---PKAAKPKSGKPKVTKAKKAAPKKK
180 190 200 210 220
>>CCDS4577.1 HIST1H1C gene_id:3006|Hs108|chr6 (213 aa)
initn: 737 init1: 737 opt: 978 Z-score: 671.9 bits: 131.5 E(32554): 4.2e-31
Smith-Waterman score: 978; 79.4% identity (89.9% similar) in 218 aa overlap (1-214:1-211)
10 20 30 40 50 60
pF1KB9 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
::::::: :. :.::.:.::::.::: :.. :::.::::::::::::::::::.:.
CCDS45 MSETAPAAPAAAPPAEKAPVKKKAAKKA---GGTPRKASGPPVSELITKAVAASKERSGV
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
60 70 80 90 100 110
130 140 150 160 170
pF1KB9 PKAKKAGAAKAKKPAGATPKKAKKAAGA---KKAVKKTPKKAKKPAAAGV-KKVAKSPKK
::.::::..: :::.::. :: :::::. ::..::::::::::::: : :::::::::
CCDS45 PKVKKAGGTKPKKPVGAA-KKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKK
120 130 140 150 160 170
180 190 200 210 220
pF1KB9 AKAAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
::.: :::::.:: : :::::::::::..::: : ::
CCDS45 AKVA-KPKKAAKSAA--KAVKPKAAKPKVVKPKKAAPKKK
180 190 200 210
>>CCDS4569.1 HIST1H1A gene_id:3024|Hs108|chr6 (215 aa)
initn: 675 init1: 554 opt: 823 Z-score: 569.5 bits: 112.5 E(32554): 2.1e-25
Smith-Waterman score: 823; 66.8% identity (83.2% similar) in 220 aa overlap (1-220:1-214)
10 20 30 40 50 60
pF1KB9 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
::::.: :. : :: : ::: : : .:.:.:.: .:: :::::..:...::::.:.
CCDS45 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
:::::::::::.::::::::::::::.:::::::::::::::::::::::::::.: :.:
CCDS45 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAA
: :.:. : : .::. :: :::.::.: :::::::::::. .: .:.::: :..
CCDS45 PGASKV--ATKTKATGAS-KKLKKATGASKKSVKTPKKAKKPAAT--RKSSKNPKKPKTV
130 140 150 160 170
190 200 210 220
pF1KB9 AKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
::::..::::: ::::::::: ...:::.:::: : ::
CCDS45 -KPKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK
180 190 200 210
>>CCDS34349.1 HIST1H1T gene_id:3010|Hs108|chr6 (207 aa)
initn: 494 init1: 462 opt: 528 Z-score: 375.0 bits: 76.5 E(32554): 1.4e-14
Smith-Waterman score: 567; 51.4% identity (75.9% similar) in 216 aa overlap (1-214:1-206)
10 20 30 40 50
pF1KB9 MSETAPAETATP--APVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERN
::::.:: .:. : .:: :.::.. .: :: .:.::. . ::.:::.:...:.::
CCDS34 MSETVPAASASAGVAAMEKLPTKKRG-RKPAGLISASRKVPNLSVSKLITEALSVSQERV
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 GLSLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGE
:.::.::::::::.:::::::::::::.:::::.:: ::::.::::::::::.::.
CCDS34 GMSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 AKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAK
.. ::::. .::.:: . . .:. :.: :: :.:::: :. . :...: .:::
CCDS34 TRSKAKKSVSAKTKKLVLSRDSKSPKTA-------KTNKRAKKPRAT-TPKTVRSGRKAK
120 130 140 150 160 170
180 190 200 210 220
pF1KB9 AAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
.: : :. :::.: .: : : .. . .. . : :
CCDS34 GA-KGKQQQKSPVKARASKSKLTQHHEVNVRKATSKK
180 190 200
226 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:07:29 2016 done: Fri Nov 4 19:07:30 2016
Total Scan time: 2.370 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]