Result of FASTA (omim) for
pF1KB9806
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9806, 226 aa
1>>>pF1KB9806 226 - 226 aa - 226 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2723+/-0.000438; mu= -3.0504+/- 0.028
mean_var=243.1331+/-47.583, 0's: 0 Z-trim(118.6): 47 B-trim: 0 in 0/56
Lambda= 0.082253
statistics sampled from 31732 (31779) to 31732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.373), width: 16
Scan time: 7.060
The best scores are: opt bits E(85289)
NP_005313 (OMIM: 142711) histone H1.5 [Homo sapien ( 226) 1372 175.1 8.5e-44
NP_005312 (OMIM: 142220) histone H1.4 [Homo sapien ( 219) 1098 142.6 5.1e-34
NP_005311 (OMIM: 142210) histone H1.3 [Homo sapien ( 221) 1020 133.3 3.1e-31
NP_005310 (OMIM: 142710) histone H1.2 [Homo sapien ( 213) 978 128.3 9.6e-30
NP_005316 (OMIM: 142709) histone H1.1 [Homo sapien ( 215) 823 109.9 3.3e-24
NP_005314 (OMIM: 142712) histone H1t [Homo sapiens ( 207) 528 74.9 1.1e-13
NP_005309 (OMIM: 142708) histone H1.0 [Homo sapien ( 194) 363 55.3 8.3e-08
NP_006017 (OMIM: 602785) histone H1x [Homo sapiens ( 213) 319 50.1 3.3e-06
NP_066554 (OMIM: 105400,162230,616924) neurofilame (1020) 252 42.7 0.0027
>>NP_005313 (OMIM: 142711) histone H1.5 [Homo sapiens] (226 aa)
initn: 1372 init1: 1372 opt: 1372 Z-score: 907.3 bits: 175.1 E(85289): 8.5e-44
Smith-Waterman score: 1372; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KB9 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAA
130 140 150 160 170 180
190 200 210 220
pF1KB9 AKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
190 200 210 220
>>NP_005312 (OMIM: 142220) histone H1.4 [Homo sapiens] (219 aa)
initn: 972 init1: 652 opt: 1098 Z-score: 731.8 bits: 142.6 E(85289): 5.1e-34
Smith-Waterman score: 1098; 84.7% identity (91.0% similar) in 222 aa overlap (1-220:1-218)
10 20 30 40 50 60
pF1KB9 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
::::::: :.:::.::.:.:::: :. ::::::::.::::::::::::::::::.:.
NP_005 MSETAPAAPAAPAPAEKTPVKKKARKS---AGAAKRKASGPPVSELITKAVAASKERSGV
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
60 70 80 90 100 110
130 140 150 160 170
pF1KB9 PKAKKAGAAKAKKPAGAT--PKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAK
:::::::::::::::::. :::: :: ::..:::::::::::::. : ::::::::
NP_005 PKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAK
120 130 140 150 160 170
180 190 200 210 220
pF1KB9 AAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
:: ::::: ::::: :::::::::::.::::::::: : :::
NP_005 AA-KPKKAPKSPAKAKAVKPKAAKPKTAKPKAAKPKKAAAKKK
180 190 200 210
>>NP_005311 (OMIM: 142210) histone H1.3 [Homo sapiens] (221 aa)
initn: 682 init1: 682 opt: 1020 Z-score: 681.7 bits: 133.3 E(85289): 3.1e-31
Smith-Waterman score: 1020; 78.3% identity (89.1% similar) in 230 aa overlap (1-226:1-221)
10 20 30 40 50 60
pF1KB9 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
:::::: . :::.::.:.:::: : ::: :.::::.::::::::::::::::::.:.
NP_005 MSETAPLAPTIPAPAEKTPVKKKAKK--AGATAGKRKASGPPVSELITKAVAASKERSGV
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::.:
NP_005 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEGK
60 70 80 90 100 110
130 140 150 160 170
pF1KB9 PKAKKAGAAKAKKPAGATPKKAKKAAGA---KKAVKKTPKKAKKPA-AAGVKKVAKSPKK
:::::::::: .:::::. :: ::.::: ::..::::::.:::: :::.:::::: ::
NP_005 PKAKKAGAAKPRKPAGAA-KKPKKVAGAATPKKSIKKTPKKVKKPATAAGTKKVAKSAKK
120 130 140 150 160 170
180 190 200 210 220
pF1KB9 AKAAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
.:. .::::.::::: :: :: :::::::..:::..:::::: :::
NP_005 VKTP-QPKKAAKSPAKAKA--PK---PKAAKPKSGKPKVTKAKKAAPKKK
180 190 200 210 220
>>NP_005310 (OMIM: 142710) histone H1.2 [Homo sapiens] (213 aa)
initn: 737 init1: 737 opt: 978 Z-score: 655.0 bits: 128.3 E(85289): 9.6e-30
Smith-Waterman score: 978; 79.4% identity (89.9% similar) in 218 aa overlap (1-214:1-211)
10 20 30 40 50 60
pF1KB9 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
::::::: :. :.::.:.::::.::: :.. :::.::::::::::::::::::.:.
NP_005 MSETAPAAPAAAPPAEKAPVKKKAAKKA---GGTPRKASGPPVSELITKAVAASKERSGV
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLAALKKALAAAGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
60 70 80 90 100 110
130 140 150 160 170
pF1KB9 PKAKKAGAAKAKKPAGATPKKAKKAAGA---KKAVKKTPKKAKKPAAAGV-KKVAKSPKK
::.::::..: :::.::. :: :::::. ::..::::::::::::: : :::::::::
NP_005 PKVKKAGGTKPKKPVGAA-KKPKKAAGGATPKKSAKKTPKKAKKPAAATVTKKVAKSPKK
120 130 140 150 160 170
180 190 200 210 220
pF1KB9 AKAAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
::.: :::::.:: : :::::::::::..::: : ::
NP_005 AKVA-KPKKAAKSAA--KAVKPKAAKPKVVKPKKAAPKKK
180 190 200 210
>>NP_005316 (OMIM: 142709) histone H1.1 [Homo sapiens] (215 aa)
initn: 675 init1: 554 opt: 823 Z-score: 555.5 bits: 109.9 E(85289): 3.3e-24
Smith-Waterman score: 823; 66.8% identity (83.2% similar) in 220 aa overlap (1-220:1-214)
10 20 30 40 50 60
pF1KB9 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
::::.: :. : :: : ::: : : .:.:.:.: .:: :::::..:...::::.:.
NP_005 MSETVPPAPAASAAPEKPLAGKKAKKPAKAAAASKKKPAGPSVSELIVQAASSSKERGGV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEAK
:::::::::::.::::::::::::::.:::::::::::::::::::::::::::.: :.:
NP_005 SLAALKKALAAAGYDVEKNNSRIKLGIKSLVSKGTLVQTKGTGASGSFKLNKKASSVETK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAKAA
: :.:. : : .::. :: :::.::.: :::::::::::. .: .:.::: :..
NP_005 PGASKV--ATKTKATGAS-KKLKKATGASKKSVKTPKKAKKPAAT--RKSSKNPKKPKTV
130 140 150 160 170
190 200 210 220
pF1KB9 AKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
::::..::::: ::::::::: ...:::.:::: : ::
NP_005 -KPKKVAKSPAKAKAVKPKAAKARVTKPKTAKPKKAAPKKK
180 190 200 210
>>NP_005314 (OMIM: 142712) histone H1t [Homo sapiens] (207 aa)
initn: 494 init1: 462 opt: 528 Z-score: 366.6 bits: 74.9 E(85289): 1.1e-13
Smith-Waterman score: 567; 51.4% identity (75.9% similar) in 216 aa overlap (1-214:1-206)
10 20 30 40 50
pF1KB9 MSETAPAETATP--APVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERN
::::.:: .:. : .:: :.::.. .: :: .:.::. . ::.:::.:...:.::
NP_005 MSETVPAASASAGVAAMEKLPTKKRG-RKPAGLISASRKVPNLSVSKLITEALSVSQERV
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 GLSLAALKKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGE
:.::.::::::::.:::::::::::::.:::::.:: ::::.::::::::::.::.
NP_005 GMSLVALKKALAAAGYDVEKNNSRIKLSLKSLVNKGILVQTRGTGASGSFKLSKKVIPKS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 AKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKAK
.. ::::. .::.:: . . .:. :.: :: :.:::: :. . :...: .:::
NP_005 TRSKAKKSVSAKTKKLVLSRDSKSPKTA-------KTNKRAKKPRAT-TPKTVRSGRKAK
120 130 140 150 160 170
180 190 200 210 220
pF1KB9 AAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
.: : :. :::.: .: : : .. . .. . : :
NP_005 GA-KGKQQQKSPVKARASKSKLTQHHEVNVRKATSKK
180 190 200
>>NP_005309 (OMIM: 142708) histone H1.0 [Homo sapiens] (194 aa)
initn: 259 init1: 145 opt: 363 Z-score: 261.1 bits: 55.3 E(85289): 8.3e-08
Smith-Waterman score: 402; 45.0% identity (64.4% similar) in 222 aa overlap (8-226:3-194)
10 20 30 40 50 60
pF1KB9 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAAKRKATGPPVSELITKAVAASKERNGL
:..: ::. : : . ::.::.. : :..:. :. : :.: :
NP_005 MTENSTSAPAAK-PKRAKASKKSTDH---------PKYSDMIVAAIQAEKNRAGS
10 20 30 40
70 80 90 100 110
pF1KB9 SLAALKKALAAGGYDVEKN-NSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNKKAASGEA
: ...: . . : : .: .:.:::..: ::. :.: ::::.::::::.: : : :
NP_005 SRQSIQKYIKSH-YKVGENADSQIKLSIKRLVTTGVLKQTKGVGASGSFRLAK---SDE-
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB9 KPKAKKAGAAKAKKPAG--ATPKKAKKAAGAKKAVKKTPKKAKKPAAAGVKKVAKSPKKA
:: :... :.:: ::::::.: :::..:.: .::: :. :::. :
NP_005 -PK-KSVAFKKTKKEIKKVATPKKASKP---KKAASKAP--TKKPKATPVKKAKK-----
110 120 130 140
180 190 200 210 220
pF1KB9 KAAAKPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAAAKKK
: :: :::: :.: :: ::.::: ::: .:::: .. : :.:::
NP_005 KLAATPKKA-KKPKTVKAKPVKASKPKKAKP--VKPKAKSSAKRAGKKK
150 160 170 180 190
>>NP_006017 (OMIM: 602785) histone H1x [Homo sapiens] (213 aa)
initn: 438 init1: 181 opt: 319 Z-score: 232.4 bits: 50.1 E(85289): 3.3e-06
Smith-Waterman score: 319; 37.9% identity (63.5% similar) in 211 aa overlap (8-202:6-213)
10 20 30 40 50
pF1KB9 MSETAPAETATPAPVEKSPAKK--KATKKAAGAGAAKRKAT---GPP--VSELITKAVAA
: : :. . .. ::: :: .:: . . ::: . . : :.:.....
NP_006 MSVELEEALPVTTAEGMAKKVTKAGGSAALSPSKKRKNSKKKNQPGKYSQLVVETIRR
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 SKERNGLSLAAL-KKALAAGGYDVEKNNSRIKLGLKSLVSKGTLVQTKGTGASGSFKLNK
:::: ::: . .: . .: ... . .: ..:.::.. ::.:.:::::.::::::.
NP_006 LGERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFKLNR
60 70 80 90 100 110
120 130 140 150 160
pF1KB9 KAASGEAKPKAKKAGAAKAKKPAGATPKKAKK-AAGAKKAVKKTPKKAKKPA------AA
: : .. .. : :: : :.. ::: :::...: :: : ...:: .:
NP_006 KKLEGGGERRGAPA-AATAPAPTAHKAKKAAPGAAGSRRADKK-PARGQKPEQRSHKKGA
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB9 GVKKVAKSPKKAKAAAKPKKATKSPAKPKAVK-PKAAKPKAAKPKAAKPKAAKAKKAAAK
:.:: :. : :.:: : .:. :::.. : ::. :
NP_006 GAKK-DKGGKAKKTAAAGGKKVKKAAKPSVPKVPKGRK
180 190 200 210
pF1KB9 KK
>>NP_066554 (OMIM: 105400,162230,616924) neurofilament h (1020 aa)
initn: 262 init1: 194 opt: 252 Z-score: 180.1 bits: 42.7 E(85289): 0.0027
Smith-Waterman score: 266; 31.2% identity (58.5% similar) in 224 aa overlap (5-222:540-756)
10 20 30
pF1KB9 MSETAPAETATPAPVEKSPAKKKATKKAAGAGAA
.:::. .: . :::::..: . . .
NP_066 ASPEKEAKSPVKEEAKSPAEAKSPEKEEAKSPAEVKSPEKA-KSPAKEEAKSPPEAKSPE
510 520 530 540 550 560
40 50 60 70 80 90
pF1KB9 KRKATGPPVSELITKAVAASKERNGLSLAALKKALAAGGYDVE-KNNSRIKLGLKSLVSK
:..: .: . :: . .::. : . : . : :. .. : .: ...
NP_066 KEEAKSPAEVKSPEKAKSPAKEEAKSPAEAKSPEKAKSPVKEEAKSPAEAKSPVKEEAKS
570 580 590 600 610 620
100 110 120 130 140 150
pF1KB9 GTLVQTKGTGASGSFKLNKKAASGEAKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVK
. :.. . : . . :. .... : . . :::.:. : :. .:: . ::
NP_066 PAEVKSPEKAKSPTKEEAKSPEKAKSPEKEEAKSPEKAKSPVKAEAKSPEKAKSPVKAEA
630 640 650 660 670 680
160 170 180 190 200
pF1KB9 KTPKKAKKPAAAGVKKVAKSPKKAKAAAK-----PKKATKSPAKPKAVKPKAAKPKAAKP
:.:.:::.: ::. ::::.:::. .: :.:: :::.: .: :. :: . .:
NP_066 KSPEKAKSP----VKEEAKSPEKAKSPVKEEAKSPEKA-KSPVKEEAKTPEKAK-SPVKE
690 700 710 720 730 740
210 220
pF1KB9 KAAKPKAAKAKKAAAKKK
.: .:. ::. . :
NP_066 EAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSPADKFPEKAKSPVKEEVKSPEKAKSP
750 760 770 780 790 800
226 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:07:30 2016 done: Fri Nov 4 19:07:31 2016
Total Scan time: 7.060 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]