Result of FASTA (omim) for
pF1KB9809
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9809, 241 aa
1>>>pF1KB9809 241 - 241 aa - 241 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9449+/-0.000305; mu= 3.4693+/- 0.019
mean_var=161.2401+/-32.234, 0's: 0 Z-trim(121.3): 111 B-trim: 0 in 0/56
Lambda= 0.101004
statistics sampled from 37599 (37722) to 37599 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.442), width: 16
Scan time: 7.840
The best scores are: opt bits E(85289)
NP_620410 (OMIM: 300411) homeobox protein TGIF2LX ( 241) 1592 243.0 3.6e-64
NP_631960 (OMIM: 400025) homeobox protein TGIF2LY ( 185) 983 154.1 1.5e-37
NP_001186444 (OMIM: 607294) homeobox protein TGIF2 ( 237) 416 71.6 1.4e-12
NP_001186443 (OMIM: 607294) homeobox protein TGIF2 ( 237) 416 71.6 1.4e-12
NP_068581 (OMIM: 607294) homeobox protein TGIF2 [H ( 237) 416 71.6 1.4e-12
NP_001186442 (OMIM: 607294) homeobox protein TGIF2 ( 237) 416 71.6 1.4e-12
NP_733796 (OMIM: 142946,602630) homeobox protein T ( 401) 383 66.9 5.8e-11
NP_775303 (OMIM: 142946,602630) homeobox protein T ( 252) 379 66.2 6e-11
NP_777480 (OMIM: 142946,602630) homeobox protein T ( 252) 379 66.2 6e-11
XP_016881448 (OMIM: 142946,602630) PREDICTED: home ( 252) 379 66.2 6e-11
NP_001265615 (OMIM: 142946,602630) homeobox protei ( 252) 379 66.2 6e-11
NP_775301 (OMIM: 142946,602630) homeobox protein T ( 252) 379 66.2 6e-11
XP_011524037 (OMIM: 142946,602630) PREDICTED: home ( 252) 379 66.2 6e-11
NP_775302 (OMIM: 142946,602630) homeobox protein T ( 252) 379 66.2 6e-11
NP_003235 (OMIM: 142946,602630) homeobox protein T ( 272) 379 66.2 6.4e-11
XP_016881447 (OMIM: 142946,602630) PREDICTED: home ( 272) 379 66.2 6.4e-11
NP_001265613 (OMIM: 142946,602630) homeobox protei ( 272) 379 66.2 6.4e-11
NP_775300 (OMIM: 142946,602630) homeobox protein T ( 272) 379 66.2 6.4e-11
NP_001265611 (OMIM: 142946,602630) homeobox protei ( 275) 379 66.2 6.5e-11
NP_775299 (OMIM: 142946,602630) homeobox protein T ( 286) 379 66.3 6.7e-11
XP_016859632 (OMIM: 601739) PREDICTED: homeobox pr ( 352) 287 52.9 8.6e-07
XP_016859631 (OMIM: 601739) PREDICTED: homeobox pr ( 417) 287 53.0 9.8e-07
XP_011519893 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 285 52.6 1e-06
XP_006720590 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 285 52.6 1e-06
XP_016859630 (OMIM: 601739) PREDICTED: homeobox pr ( 433) 287 53.0 1e-06
XP_006720589 (OMIM: 601740) PREDICTED: homeobox pr ( 389) 285 52.6 1.1e-06
XP_006720586 (OMIM: 601740) PREDICTED: homeobox pr ( 476) 285 52.7 1.3e-06
NP_733775 (OMIM: 601740) homeobox protein Meis2 is ( 477) 285 52.7 1.3e-06
XP_006718957 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 280 51.9 1.7e-06
XP_011541249 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 280 51.9 1.7e-06
XP_016873600 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 280 51.9 1.7e-06
XP_005271700 (OMIM: 613066) PREDICTED: homeobox pr ( 443) 280 52.0 2.1e-06
XP_005271699 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 280 52.0 2.2e-06
NP_071345 (OMIM: 613066) homeobox protein PKNOX2 [ ( 472) 280 52.0 2.2e-06
XP_016873599 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 280 52.0 2.2e-06
XP_011541247 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 280 52.0 2.2e-06
XP_011541246 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 280 52.0 2.2e-06
NP_733776 (OMIM: 601740) homeobox protein Meis2 is ( 470) 278 51.7 2.7e-06
NP_001207411 (OMIM: 601740) homeobox protein Meis2 ( 470) 278 51.7 2.7e-06
XP_006720592 (OMIM: 601740) PREDICTED: homeobox pr ( 255) 266 49.8 5.5e-06
NP_758526 (OMIM: 601740) homeobox protein Meis2 is ( 388) 266 49.9 7.7e-06
XP_006720587 (OMIM: 601740) PREDICTED: homeobox pr ( 400) 266 49.9 7.9e-06
NP_733777 (OMIM: 601740) homeobox protein Meis2 is ( 401) 266 49.9 7.9e-06
XP_016859633 (OMIM: 601739) PREDICTED: homeobox pr ( 321) 264 49.5 8.1e-06
XP_016859634 (OMIM: 601739) PREDICTED: homeobox pr ( 321) 264 49.5 8.1e-06
XP_016877694 (OMIM: 601740) PREDICTED: homeobox pr ( 306) 263 49.4 8.6e-06
NP_758527 (OMIM: 601740) homeobox protein Meis2 is ( 306) 263 49.4 8.6e-06
XP_005264381 (OMIM: 601739) PREDICTED: homeobox pr ( 400) 264 49.6 9.7e-06
NP_002390 (OMIM: 601740) homeobox protein Meis2 is ( 381) 263 49.4 1e-05
XP_006720588 (OMIM: 601740) PREDICTED: homeobox pr ( 393) 263 49.4 1.1e-05
>>NP_620410 (OMIM: 300411) homeobox protein TGIF2LX [Hom (241 aa)
initn: 1592 init1: 1592 opt: 1592 Z-score: 1273.0 bits: 243.0 E(85289): 3.6e-64
Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)
10 20 30 40 50 60
pF1KB9 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IIGHKTGKDAHATHLQSTEASVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 IIGHKTGKDAHATHLQSTEASVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 QKLTGIAQPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 QKLTGIAQPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPN
190 200 210 220 230 240
pF1KB9 P
:
NP_620 P
>>NP_631960 (OMIM: 400025) homeobox protein TGIF2LY [Hom (185 aa)
initn: 972 init1: 972 opt: 983 Z-score: 795.1 bits: 154.1 E(85289): 1.5e-37
Smith-Waterman score: 983; 84.9% identity (91.1% similar) in 179 aa overlap (1-179:1-178)
10 20 30 40 50 60
pF1KB9 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_631 MEAAADGPAETQSPVEKDSPAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP
:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
NP_631 SVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLRISNWFINARRRILPDMLQQRRNDP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IIGHKTGKDAHATHLQSTEASVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPS
:::::::::::::::::::::::::::: .. : : ... .:.. . .: :
NP_631 IIGHKTGKDAHATHLQSTEASVPAKSGPVVQTMYKACPCGPCQRAR-CQERSNQIRSRPL
130 140 150 160 170
190 200 210 220 230 240
pF1KB9 QKLTGIAQPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPN
NP_631 ARSSPE
180
>>NP_001186444 (OMIM: 607294) homeobox protein TGIF2 [Ho (237 aa)
initn: 498 init1: 358 opt: 416 Z-score: 347.0 bits: 71.6 E(85289): 1.4e-12
Smith-Waterman score: 531; 46.8% identity (70.2% similar) in 205 aa overlap (50-240:18-221)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:.::.:::: :::::::::.: ::..::::
NP_001 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQ
:.:: :: .::::.::: :::::::::.:::::.. .:: :... :: . .. .
NP_001 EQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPR
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB9 STEASVPAKSGPSGPDNVQSLPL--WPLPKGQMSREKQPDPES---APSQKLTGIAQPKK
.. :: : : :. : :: :: . :: .:: . : :.. .:. .: .
NP_001 GSSPSVLAVSVPA-PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTL
110 120 130 140 150 160
200 210 220 230 240
pF1KB9 KVKVSVTSPS-----SPELVSPEE-HADFSSFLLLVDAAVQRAAELELEKKQEPNP
... . ::. .: . ::. . ::::: :::..:.:::::.::.:.:.:.
NP_001 LTRAEAGSPTGGLFNTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLH
170 180 190 200 210 220
NP_001 TPIPLVSENPQ
230
>>NP_001186443 (OMIM: 607294) homeobox protein TGIF2 [Ho (237 aa)
initn: 498 init1: 358 opt: 416 Z-score: 347.0 bits: 71.6 E(85289): 1.4e-12
Smith-Waterman score: 531; 46.8% identity (70.2% similar) in 205 aa overlap (50-240:18-221)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:.::.:::: :::::::::.: ::..::::
NP_001 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQ
:.:: :: .::::.::: :::::::::.:::::.. .:: :... :: . .. .
NP_001 EQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPR
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB9 STEASVPAKSGPSGPDNVQSLPL--WPLPKGQMSREKQPDPES---APSQKLTGIAQPKK
.. :: : : :. : :: :: . :: .:: . : :.. .:. .: .
NP_001 GSSPSVLAVSVPA-PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTL
110 120 130 140 150 160
200 210 220 230 240
pF1KB9 KVKVSVTSPS-----SPELVSPEE-HADFSSFLLLVDAAVQRAAELELEKKQEPNP
... . ::. .: . ::. . ::::: :::..:.:::::.::.:.:.:.
NP_001 LTRAEAGSPTGGLFNTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLH
170 180 190 200 210 220
NP_001 TPIPLVSENPQ
230
>>NP_068581 (OMIM: 607294) homeobox protein TGIF2 [Homo (237 aa)
initn: 498 init1: 358 opt: 416 Z-score: 347.0 bits: 71.6 E(85289): 1.4e-12
Smith-Waterman score: 531; 46.8% identity (70.2% similar) in 205 aa overlap (50-240:18-221)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:.::.:::: :::::::::.: ::..::::
NP_068 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQ
:.:: :: .::::.::: :::::::::.:::::.. .:: :... :: . .. .
NP_068 EQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPR
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB9 STEASVPAKSGPSGPDNVQSLPL--WPLPKGQMSREKQPDPES---APSQKLTGIAQPKK
.. :: : : :. : :: :: . :: .:: . : :.. .:. .: .
NP_068 GSSPSVLAVSVPA-PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTL
110 120 130 140 150 160
200 210 220 230 240
pF1KB9 KVKVSVTSPS-----SPELVSPEE-HADFSSFLLLVDAAVQRAAELELEKKQEPNP
... . ::. .: . ::. . ::::: :::..:.:::::.::.:.:.:.
NP_068 LTRAEAGSPTGGLFNTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLH
170 180 190 200 210 220
NP_068 TPIPLVSENPQ
230
>>NP_001186442 (OMIM: 607294) homeobox protein TGIF2 [Ho (237 aa)
initn: 498 init1: 358 opt: 416 Z-score: 347.0 bits: 71.6 E(85289): 1.4e-12
Smith-Waterman score: 531; 46.8% identity (70.2% similar) in 205 aa overlap (50-240:18-221)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:.::.:::: :::::::::.: ::..::::
NP_001 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQ
:.:: :: .::::.::: :::::::::.:::::.. .:: :... :: . .. .
NP_001 EQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPR
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB9 STEASVPAKSGPSGPDNVQSLPL--WPLPKGQMSREKQPDPES---APSQKLTGIAQPKK
.. :: : : :. : :: :: . :: .:: . : :.. .:. .: .
NP_001 GSSPSVLAVSVPA-PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTL
110 120 130 140 150 160
200 210 220 230 240
pF1KB9 KVKVSVTSPS-----SPELVSPEE-HADFSSFLLLVDAAVQRAAELELEKKQEPNP
... . ::. .: . ::. . ::::: :::..:.:::::.::.:.:.:.
NP_001 LTRAEAGSPTGGLFNTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLH
170 180 190 200 210 220
NP_001 TPIPLVSENPQ
230
>>NP_733796 (OMIM: 142946,602630) homeobox protein TGIF1 (401 aa)
initn: 473 init1: 357 opt: 383 Z-score: 317.7 bits: 66.9 E(85289): 5.8e-11
Smith-Waterman score: 386; 38.3% identity (64.9% similar) in 188 aa overlap (5-173:120-299)
10 20 30
pF1KB9 MEAAADGPAETQSPVE--KDSPAKTQSPAQDTSI
:.::: . .: : : . : ..: .
NP_733 QPRALSPELGTKAGPRRPHRWELPRSPSQGAQGPAPRRRLLETMKGIVAASGSETEDEDS
90 100 110 120 130 140
40 50 60 70 80
pF1KB9 MS-----RNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLS
:. ..: .: :..:.:::: :::.:::::.:.::..:::::.:: .::
NP_733 MDIPLDLSSSAGSG--------KRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLS
150 160 170 180 190 200
90 100 110 120 130 140
pF1KB9 EKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQSTEA----
..:.:: ::. :::::::::.:::::.. .:: :... .: .... ..:. .
NP_733 QQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNF
210 220 230 240 250 260
150 160 170 180 190
pF1KB9 -----SVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPSQKLTGIAQPKKKVKV
.: .: .::. . . :: : :.. : .:
NP_733 MPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSV
270 280 290 300 310 320
200 210 220 230 240
pF1KB9 SVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPNP
NP_733 GVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLNQDFSGFQL
330 340 350 360 370 380
>>NP_775303 (OMIM: 142946,602630) homeobox protein TGIF1 (252 aa)
initn: 473 init1: 357 opt: 379 Z-score: 317.5 bits: 66.2 E(85289): 6e-11
Smith-Waterman score: 382; 44.1% identity (72.8% similar) in 136 aa overlap (50-173:15-150)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
NP_775 MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQ
:.:: .::..:.:: ::. :::::::::.:::::.. .:: :... .: .... ..
NP_775 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 STEA---------SVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPSQKLTGIA
:. . .: .: .::. . . :: : :.. : .:
NP_775 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 QPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPNP
NP_775 PFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLN
170 180 190 200 210 220
>>NP_777480 (OMIM: 142946,602630) homeobox protein TGIF1 (252 aa)
initn: 473 init1: 357 opt: 379 Z-score: 317.5 bits: 66.2 E(85289): 6e-11
Smith-Waterman score: 382; 44.1% identity (72.8% similar) in 136 aa overlap (50-173:15-150)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
NP_777 MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQ
:.:: .::..:.:: ::. :::::::::.:::::.. .:: :... .: .... ..
NP_777 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 STEA---------SVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPSQKLTGIA
:. . .: .: .::. . . :: : :.. : .:
NP_777 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 QPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPNP
NP_777 PFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLN
170 180 190 200 210 220
>>XP_016881448 (OMIM: 142946,602630) PREDICTED: homeobox (252 aa)
initn: 473 init1: 357 opt: 379 Z-score: 317.5 bits: 66.2 E(85289): 6e-11
Smith-Waterman score: 382; 44.1% identity (72.8% similar) in 136 aa overlap (50-173:15-150)
20 30 40 50 60 70
pF1KB9 PAKTQSPAQDTSIMSRNNADTGRVLALPEHKKKRKGNLPAESVKILRDWMYKHRFKAYPS
:..:.:::: :::.:::::.:.::..::::
XP_016 MDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYNAYPS
10 20 30 40
80 90 100 110 120 130
pF1KB9 EEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDP---IIGHKTGKDAHATHLQ
:.:: .::..:.:: ::. :::::::::.:::::.. .:: :... .: .... ..
XP_016 EQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVE
50 60 70 80 90 100
140 150 160 170 180
pF1KB9 STEA---------SVPAKSGPSGPDNVQSLPLWPLPKGQMSREKQPDPESAPSQKLTGIA
:. . .: .: .::. . . :: : :.. : .:
XP_016 SVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDV
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 QPKKKVKVSVTSPSSPELVSPEEHADFSSFLLLVDAAVQRAAELELEKKQEPNP
XP_016 PFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLN
170 180 190 200 210 220
241 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:08:40 2016 done: Fri Nov 4 19:08:41 2016
Total Scan time: 7.840 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]