Result of FASTA (ccds) for
pF1KB9812
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9812, 257 aa
1>>>pF1KB9812 257 - 257 aa - 257 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8808+/-0.000781; mu= 12.8843+/- 0.047
mean_var=82.3239+/-16.008, 0's: 0 Z-trim(110.0): 10 B-trim: 0 in 0/50
Lambda= 0.141355
statistics sampled from 11267 (11275) to 11267 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.346), width: 16
Scan time: 2.090
The best scores are: opt bits E(32554)
CCDS8538.1 NTF3 gene_id:4908|Hs108|chr12 ( 257) 1721 360.1 8.8e-100
CCDS44806.1 NTF3 gene_id:4908|Hs108|chr12 ( 270) 1721 360.1 9.2e-100
CCDS882.1 NGF gene_id:4803|Hs108|chr1 ( 241) 601 131.6 4.8e-31
CCDS7866.1 BDNF gene_id:627|Hs108|chr11 ( 247) 574 126.1 2.2e-29
CCDS7865.1 BDNF gene_id:627|Hs108|chr11 ( 255) 574 126.1 2.3e-29
CCDS41628.1 BDNF gene_id:627|Hs108|chr11 ( 262) 574 126.2 2.3e-29
CCDS44558.1 BDNF gene_id:627|Hs108|chr11 ( 329) 574 126.2 2.8e-29
CCDS12754.1 NTF4 gene_id:4909|Hs108|chr19 ( 210) 502 111.4 5.1e-25
>>CCDS8538.1 NTF3 gene_id:4908|Hs108|chr12 (257 aa)
initn: 1721 init1: 1721 opt: 1721 Z-score: 1904.9 bits: 360.1 E(32554): 8.8e-100
Smith-Waterman score: 1721; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KB9 MSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNKLSKQMVDVKENYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 MSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNKLSKQMVDVKENYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 STLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLSDSTPLEPPPLYLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 STLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLSDSTPLEPPPLYLM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 EDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGEIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 EDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGEIK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 TGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS85 TGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWI
190 200 210 220 230 240
250
pF1KB9 RIDTSCVCALSRKIGRT
:::::::::::::::::
CCDS85 RIDTSCVCALSRKIGRT
250
>>CCDS44806.1 NTF3 gene_id:4908|Hs108|chr12 (270 aa)
initn: 1721 init1: 1721 opt: 1721 Z-score: 1904.6 bits: 360.1 E(32554): 9.2e-100
Smith-Waterman score: 1721; 100.0% identity (100.0% similar) in 257 aa overlap (1-257:14-270)
10 20 30 40
pF1KB9 MSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNK
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MVTFATILQVNKVMSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 LSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 DSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DSTPLEPPPLYLMEDYVGSPVVANRTSRRKRYAEHKSHRGEYSVCDSESLWVTDKSSAID
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 IRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IRGHQVTVLGEIKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRAL
190 200 210 220 230 240
230 240 250
pF1KB9 TSENNKLVGWRWIRIDTSCVCALSRKIGRT
::::::::::::::::::::::::::::::
CCDS44 TSENNKLVGWRWIRIDTSCVCALSRKIGRT
250 260 270
>>CCDS882.1 NGF gene_id:4803|Hs108|chr1 (241 aa)
initn: 464 init1: 402 opt: 601 Z-score: 670.9 bits: 131.6 E(32554): 4.8e-31
Smith-Waterman score: 634; 42.6% identity (67.4% similar) in 258 aa overlap (1-256:1-239)
10 20 30 40 50 60
pF1KB9 MSILFYVIFLAYLRGIQGNNMDQRSLPEDSLNSLIIKLIQADILKNKLSKQMVDVKENYQ
::.:::... :.: :::.. .. ..: . :: : .... .
CCDS88 MSMLFYTLITAFLIGIQAEPHSESNVPAGHT------IPQAHWTK---------LQHSLD
10 20 30 40
70 80 90 100 110
pF1KB9 STLPKAEAPREPERGGPAKSAFQPV-IAMDTELLRQQRRYNSPRVLLSDSTPLEPPPLYL
..: .:.. : . :. : : :..: .:... :: :::::.: . : :
CCDS88 TALRRARS--APAAAIAARVAGQTRNITVDPRLFKK-RRLRSPRVLFSTQPPREAADTQD
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB9 MEDYVGSPVVANRTSRRKRYAEHKS-HRGEYSVCDSESLWVTDKSSAIDIRGHQVTVLGE
.. ::. . ::: : :: . : ::::.::::: :.:: ::..: ::.:..: ::::
CCDS88 LDFEVGGAAPFNRTHRSKRSSSHPIFHRGEFSVCDSVSVWVGDKTTATDIKGKEVMVLGE
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB9 IKTGNSPVKQYFYETRCKEARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWR
.. .:: ::::.::.:.. :: .::::::.::::: : :..:.:.::: .. : ..::
CCDS88 VNINNSVFKQYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDG-KQAAWR
170 180 190 200 210 220
240 250
pF1KB9 WIRIDTSCVCALSRKIGRT
.:::::.:::.:::: :
CCDS88 FIRIDTACVCVLSRKAVRRA
230 240
>>CCDS7866.1 BDNF gene_id:627|Hs108|chr11 (247 aa)
initn: 512 init1: 414 opt: 574 Z-score: 641.0 bits: 126.1 E(32554): 2.2e-29
Smith-Waterman score: 582; 45.5% identity (74.2% similar) in 209 aa overlap (60-256:40-247)
30 40 50 60 70 80
pF1KB9 SLNSLIIKLIQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPA-KSAFQPVIA-
..:: ....:. :: . ..:. ::
CCDS78 ISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEE
10 20 30 40 50 60
90 100 110 120 130
pF1KB9 -MDTEL-LRQQRRYN------SPRVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRY
.: . .: ... : . ::.::...::::: :.:.:.: . .:: . : .:.
CCDS78 LLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRH
70 80 90 100 110 120
140 150 160 170 180 190
pF1KB9 AEHKSHRGEYSVCDSESLWVT--DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKE
.. ..::: ::::: : ::: ::..:.:. : :::: .. .... .:::::::.:.
CCDS78 SD-PARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNP
130 140 150 160 170 180
200 210 220 230 240 250
pF1KB9 ARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT
.:.:::::: .::::::.:.:.:::::: ...: .:::.:::::::::.:. : ::
CCDS78 MGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR
190 200 210 220 230 240
>>CCDS7865.1 BDNF gene_id:627|Hs108|chr11 (255 aa)
initn: 512 init1: 414 opt: 574 Z-score: 640.8 bits: 126.1 E(32554): 2.3e-29
Smith-Waterman score: 582; 45.5% identity (74.2% similar) in 209 aa overlap (60-256:48-255)
30 40 50 60 70 80
pF1KB9 SLNSLIIKLIQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPA-KSAFQPVIA-
..:: ....:. :: . ..:. ::
CCDS78 ISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEE
20 30 40 50 60 70
90 100 110 120 130
pF1KB9 -MDTEL-LRQQRRYN------SPRVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRY
.: . .: ... : . ::.::...::::: :.:.:.: . .:: . : .:.
CCDS78 LLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRH
80 90 100 110 120 130
140 150 160 170 180 190
pF1KB9 AEHKSHRGEYSVCDSESLWVT--DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKE
.. ..::: ::::: : ::: ::..:.:. : :::: .. .... .:::::::.:.
CCDS78 SD-PARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNP
140 150 160 170 180 190
200 210 220 230 240 250
pF1KB9 ARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT
.:.:::::: .::::::.:.:.:::::: ...: .:::.:::::::::.:. : ::
CCDS78 MGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR
200 210 220 230 240 250
>>CCDS41628.1 BDNF gene_id:627|Hs108|chr11 (262 aa)
initn: 512 init1: 414 opt: 574 Z-score: 640.6 bits: 126.2 E(32554): 2.3e-29
Smith-Waterman score: 582; 45.5% identity (74.2% similar) in 209 aa overlap (60-256:55-262)
30 40 50 60 70 80
pF1KB9 SLNSLIIKLIQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPA-KSAFQPVIA-
..:: ....:. :: . ..:. ::
CCDS41 ISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEE
30 40 50 60 70 80
90 100 110 120 130
pF1KB9 -MDTEL-LRQQRRYN------SPRVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRY
.: . .: ... : . ::.::...::::: :.:.:.: . .:: . : .:.
CCDS41 LLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRH
90 100 110 120 130 140
140 150 160 170 180 190
pF1KB9 AEHKSHRGEYSVCDSESLWVT--DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKE
.. ..::: ::::: : ::: ::..:.:. : :::: .. .... .:::::::.:.
CCDS41 SD-PARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNP
150 160 170 180 190 200
200 210 220 230 240 250
pF1KB9 ARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT
.:.:::::: .::::::.:.:.:::::: ...: .:::.:::::::::.:. : ::
CCDS41 MGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR
210 220 230 240 250 260
>>CCDS44558.1 BDNF gene_id:627|Hs108|chr11 (329 aa)
initn: 512 init1: 414 opt: 574 Z-score: 639.1 bits: 126.2 E(32554): 2.8e-29
Smith-Waterman score: 582; 45.5% identity (74.2% similar) in 209 aa overlap (60-256:122-329)
30 40 50 60 70 80
pF1KB9 SLNSLIIKLIQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPA-KSAFQPVIA-
..:: ....:. :: . ..:. ::
CCDS44 ISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEE
100 110 120 130 140 150
90 100 110 120 130
pF1KB9 -MDTEL-LRQQRRYN------SPRVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRY
.: . .: ... : . ::.::...::::: :.:.:.: . .:: . : .:.
CCDS44 LLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRH
160 170 180 190 200 210
140 150 160 170 180 190
pF1KB9 AEHKSHRGEYSVCDSESLWVT--DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKE
.. ..::: ::::: : ::: ::..:.:. : :::: .. .... .:::::::.:.
CCDS44 SD-PARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNP
220 230 240 250 260 270
200 210 220 230 240 250
pF1KB9 ARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT
.:.:::::: .::::::.:.:.:::::: ...: .:::.:::::::::.:. : ::
CCDS44 MGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR
280 290 300 310 320
>>CCDS12754.1 NTF4 gene_id:4909|Hs108|chr19 (210 aa)
initn: 602 init1: 268 opt: 502 Z-score: 562.7 bits: 111.4 E(32554): 5.1e-25
Smith-Waterman score: 578; 46.3% identity (69.2% similar) in 201 aa overlap (69-256:18-209)
40 50 60 70 80 90
pF1KB9 IQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRR
: : .. : :.. : .: . .::
CCDS12 MLPLPSCSLPILLLFLLPSVPIESQPPPSTLPPFLAPEWDLL-----
10 20 30 40
100 110 120 130 140 150
pF1KB9 YNSPRVLLSDSTPLEPPPLYLME-----DYVGSPVVANRTSRRKRYAEHKSHRGEYSVCD
::::.:: ..: :: :.:.: . .:.: :::. : . :.::: .:::
CCDS12 --SPRVVLSRGAPAGPPLLFLLEAGAFRESAGAP--ANRSRRGVSETAPASRRGELAVCD
50 60 70 80 90
160 170 180 190 200
pF1KB9 SESLWVTDKSSAIDIRGHQVTVLGEIKT-GNSPVKQYFYETRCK-----EARPVKNG--C
. : ::::. .:.:.::..: ::::. . :.::..:::.::::: :. : .: :
CCDS12 AVSGWVTDRRTAVDLRGREVEVLGEVPAAGGSPLRQYFFETRCKADNAEEGGPGAGGGGC
100 110 120 130 140 150
210 220 230 240 250
pF1KB9 RGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT
::.: .:: :.::..:.::::::.. . ::::::::::.:::.: . ::
CCDS12 RGVDRRHWVSECKAKQSYVRALTADAQGRVGWRWIRIDTACVCTLLSRTGRA
160 170 180 190 200 210
257 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:10:59 2016 done: Fri Nov 4 19:11:00 2016
Total Scan time: 2.090 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]