FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9815, 299 aa
  1>>>pF1KB9815 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5544+/-0.000746; mu= 8.5004+/- 0.046
 mean_var=185.9477+/-37.107, 0's: 0 Z-trim(116.6): 7  B-trim: 3 in 1/52
 Lambda= 0.094054
 statistics sampled from 17267 (17273) to 17267 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.531), width:  16
 Scan time:  3.110

The best scores are:                                      opt bits E(32554)
CCDS13483.1 PPP1R3D gene_id:5509|Hs108|chr20       ( 299) 2110 297.5   8e-81
CCDS61403.1 PPP1R3E gene_id:90673|Hs108|chr14      ( 279)  534 83.6 1.8e-16


>>CCDS13483.1 PPP1R3D gene_id:5509|Hs108|chr20            (299 aa)
 initn: 2110 init1: 2110 opt: 2110  Z-score: 1564.5  bits: 297.5 E(32554): 8e-81
Smith-Waterman score: 2110; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB9 MSRGPSSAVLPSALGSRKLGPRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAPSGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSRGPSSAVLPSALGSRKLGPRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAPSGC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 DPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRVRFADALGLELAQVKVFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQKLRVRFADALGLELAQVKVFN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 AGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFPPPVEAADFGERLQRQLVCLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDFPPPVEAADFGERLQRQLVCLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 RVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRSTHEAVARWRGPAGPEGTEDVFTFGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRSTHEAVARWRGPAGPEGTEDVFTFGF
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB9 PVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLTCRNHALHMPRGECEESWIHFI
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLTCRNHALHMPRGECEESWIHFI
              250       260       270       280       290         

>>CCDS61403.1 PPP1R3E gene_id:90673|Hs108|chr14           (279 aa)
 initn: 519 init1: 340 opt: 534  Z-score: 409.1  bits: 83.6 E(32554): 1.8e-16
Smith-Waterman score: 534; 38.2% identity (57.3% similar) in 288 aa overlap (21-299:12-279)

               10        20        30        40        50        60
pF1KB9 MSRGPSSAVLPSALGSRKLGPRSLSCLSDLDGGVALEPRACRPPGSPGRAPPPTPAPSGC
                           ::.:: ..      ::  ::      :.    :   :.  
CCDS61          MSRERPPGTDIPRNLSFIA------ALTERAYYRSQRPSLEEEPEEEPGEG
                        10              20        30        40     

               70        80        90           100       110      
pF1KB9 DPRLRPIILRRARSLPSSPERRQKAAGAPGAACRPGCSQ----KLRVRFADALGLELAQV
         :.      :.:.   :  :: ..: : :.. :   :.    . ::::::::::::: :
CCDS61 GTRFGA----RSRAHAPSRGRRARSAPAGGGGARAPRSRSPDTRKRVRFADALGLELAVV
          50            60        70        80        90       100 

        120       130          140         150       160       170 
pF1KB9 KVFNAGDDPSVPLHV---LSRLAINSDLCCS--SQDLEFTLHCLVPDFPPPVEAADFGER
       . :  :. : :: ::   :.: :.     :.  .. :. .   : :   :      :. :
CCDS61 RRFRPGELPRVPRHVQIQLQRDALRHFAPCQPRARGLQEARAALEPASEP-----GFAAR
             110       120       130       140       150           

             180       190       200       210       220       230 
pF1KB9 LQRQLVCLERVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRSTHEAVARWRGPAGPEG
       :  : .::::.  . ::..:..:: ..:.::.:.::.. .:::: .:: : . ::: :  
CCDS61 LLTQRICLERAEAGPLGVAGSARVVDLAYEKRVSVRWSADGWRSQREAPAAYAGPAPPPP
        160       170       180       190       200       210      

             240       250       260       270       280       290 
pF1KB9 TEDVFTFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSLTCRNHALHMPRGEC
         : :.: .:.::    .:. . ::.::.:.: :.::::  :::.:   .:       : 
CCDS61 RADRFAFRLPAPP----IGGALLFALRYRVTGHEFWDNNGGRDYALRGPEHPGSGGAPE-
        220           230       240       250       260       270  

               
pF1KB9 EESWIHFI
        ..:::::
CCDS61 PQGWIHFI
               




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:12:07 2016 done: Fri Nov  4 19:12:08 2016
 Total Scan time:  3.110 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]