FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9817, 305 aa
  1>>>pF1KB9817 305 - 305 aa - 305 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0950+/-0.000405; mu= 17.3933+/- 0.025
 mean_var=78.4904+/-16.645, 0's: 0 Z-trim(113.2): 100  B-trim: 1228 in 1/49
 Lambda= 0.144766
 statistics sampled from 22291 (22385) to 22291 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.262), width:  16
 Scan time:  6.960

The best scores are:                                      opt bits E(85289)
NP_001073336 (OMIM: 170993,614866,614867) peroxiso ( 305) 2119 452.1 6.3e-127
NP_001165557 (OMIM: 170993,614866,614867) peroxiso ( 305) 2119 452.1 6.3e-127
NP_001165558 (OMIM: 170993,614866,614867) peroxiso ( 305) 2119 452.1 6.3e-127
NP_000309 (OMIM: 170993,614866,614867) peroxisome  ( 305) 2119 452.1 6.3e-127


>>NP_001073336 (OMIM: 170993,614866,614867) peroxisome b  (305 aa)
 initn: 2119 init1: 2119 opt: 2119  Z-score: 2399.7  bits: 452.1 E(85289): 6.3e-127
Smith-Waterman score: 2119; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KB9 MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 WVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 YDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 GKECALCGEWPTMPHTIGCEHIFCYFCAKSSFLFDVYFTCPKCGTEVHSLQPLKSGIEMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKECALCGEWPTMPHTIGCEHIFCYFCAKSSFLFDVYFTCPKCGTEVHSLQPLKSGIEMS
              250       260       270       280       290       300

            
pF1KB9 EVNAL
       :::::
NP_001 EVNAL
            

>>NP_001165557 (OMIM: 170993,614866,614867) peroxisome b  (305 aa)
 initn: 2119 init1: 2119 opt: 2119  Z-score: 2399.7  bits: 452.1 E(85289): 6.3e-127
Smith-Waterman score: 2119; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KB9 MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 WVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 YDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 GKECALCGEWPTMPHTIGCEHIFCYFCAKSSFLFDVYFTCPKCGTEVHSLQPLKSGIEMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKECALCGEWPTMPHTIGCEHIFCYFCAKSSFLFDVYFTCPKCGTEVHSLQPLKSGIEMS
              250       260       270       280       290       300

            
pF1KB9 EVNAL
       :::::
NP_001 EVNAL
            

>>NP_001165558 (OMIM: 170993,614866,614867) peroxisome b  (305 aa)
 initn: 2119 init1: 2119 opt: 2119  Z-score: 2399.7  bits: 452.1 E(85289): 6.3e-127
Smith-Waterman score: 2119; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KB9 MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 WVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 YDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 GKECALCGEWPTMPHTIGCEHIFCYFCAKSSFLFDVYFTCPKCGTEVHSLQPLKSGIEMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKECALCGEWPTMPHTIGCEHIFCYFCAKSSFLFDVYFTCPKCGTEVHSLQPLKSGIEMS
              250       260       270       280       290       300

            
pF1KB9 EVNAL
       :::::
NP_001 EVNAL
            

>>NP_000309 (OMIM: 170993,614866,614867) peroxisome biog  (305 aa)
 initn: 2119 init1: 2119 opt: 2119  Z-score: 2399.7  bits: 452.1 E(85289): 6.3e-127
Smith-Waterman score: 2119; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KB9 MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 WVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 WVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 YDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 GKECALCGEWPTMPHTIGCEHIFCYFCAKSSFLFDVYFTCPKCGTEVHSLQPLKSGIEMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GKECALCGEWPTMPHTIGCEHIFCYFCAKSSFLFDVYFTCPKCGTEVHSLQPLKSGIEMS
              250       260       270       280       290       300

            
pF1KB9 EVNAL
       :::::
NP_000 EVNAL
            




305 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:24:53 2016 done: Fri Nov  4 19:24:54 2016
 Total Scan time:  6.960 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]