Result of FASTA (ccds) for
pF1KB9822
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9822, 312 aa
1>>>pF1KB9822 312 - 312 aa - 312 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2390+/-0.000734; mu= 13.4843+/- 0.044
mean_var=122.0526+/-24.920, 0's: 0 Z-trim(113.2): 13 B-trim: 0 in 0/51
Lambda= 0.116092
statistics sampled from 13894 (13904) to 13894 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.427), width: 16
Scan time: 2.660
The best scores are: opt bits E(32554)
CCDS5499.1 PURB gene_id:5814|Hs108|chr7 ( 312) 2117 364.9 4.4e-101
CCDS4220.1 PURA gene_id:5813|Hs108|chr5 ( 322) 753 136.5 2.7e-32
CCDS6081.1 PURG gene_id:29942|Hs108|chr8 ( 347) 469 89.0 5.8e-18
CCDS34878.1 PURG gene_id:29942|Hs108|chr8 ( 322) 349 68.8 6.2e-12
>>CCDS5499.1 PURB gene_id:5814|Hs108|chr7 (312 aa)
initn: 2117 init1: 2117 opt: 2117 Z-score: 1928.2 bits: 364.9 E(32554): 4.4e-101
Smith-Waterman score: 2117; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)
10 20 30 40 50 60
pF1KB9 MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 IAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EFRDALAKLIDDYGGEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 YGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRGGGSGG
250 260 270 280 290 300
310
pF1KB9 GEESEGEEVDED
::::::::::::
CCDS54 GEESEGEEVDED
310
>>CCDS4220.1 PURA gene_id:5813|Hs108|chr5 (322 aa)
initn: 1048 init1: 498 opt: 753 Z-score: 693.4 bits: 136.5 E(32554): 2.7e-32
Smith-Waterman score: 1270; 71.7% identity (83.6% similar) in 286 aa overlap (4-289:31-288)
10 20 30
pF1KB9 MADGDSGSERGGGGGPCGFQPASRGGGEQETQE
: .:. ::::: : .. :: ..::::
CCDS42 MADRDSGSEQGGAALGSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGGGAPGGLQHETQE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 LASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEH
:::::.:::::::::::::::::::::::::::::.::::::::.::.:::: :::::::
CCDS42 LASKRVDIQNKRFYLDVKQNAKGRFLKIAEVGAGGNKSRLTLSMSVAVEFRDYLGDFIEH
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB9 YAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRG
:::::::.: .:: . .: ::::::::::::::::::.::::::::::::::::::::
CCDS42 YAQLGPSQPPDLAQAQDE---PRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRG
130 140 150 160 170
160 170 180 190 200 210
pF1KB9 GGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGGGAGGPGG
:: :. : :::::::::::::::::::::::::: :.. :.
CCDS42 -------PGLGSTQ-GQTIALPAQGLIEFRDALAKLIDDYGVEEE-----PA--------
180 190 200 210
220 230 240 250 260 270
pF1KB9 GLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFC
:::::::.:::.:::::::: ::::::.:::::::.:::.::::.:.:.::: .::
CCDS42 ----ELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTYRNSITVPYKVWAKFGHTFC
220 230 240 250 260 270
280 290 300 310
pF1KB9 RYADEMKEIQERQRDKLYERRGGGSGGGEESEGEEVDED
.:..:::.:::.::.:
CCDS42 KYSEEMKKIQEKQREKRAACEQLHQQQQQQQEETAAATLLLQGEEEGEED
280 290 300 310 320
>>CCDS6081.1 PURG gene_id:29942|Hs108|chr8 (347 aa)
initn: 1024 init1: 338 opt: 469 Z-score: 435.9 bits: 89.0 E(32554): 5.8e-18
Smith-Waterman score: 944; 53.7% identity (71.8% similar) in 309 aa overlap (23-305:49-344)
10 20 30 40 50
pF1KB9 MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQ
...:: : :::::::.:::.:::::::::
CCDS60 NVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELASKRVDIQKKRFYLDVKQ
20 30 40 50 60 70
60 70 80 90 100
pF1KB9 NAKGRFLKIAEVGAGGS------KSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLA
...::::::::: : . ::.::::..::::..: :::::::::.:: .. .:
CCDS60 SSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLGDFIEHYAHLGLKGHRQEH
80 90 100 110 120 130
110 120 130 140
pF1KB9 AGAEEGGGPRR--------------------ALKSEFLVRENRKYYLDLKENQRGRFLRI
. ..: :. :: .::.... :.:::::::::::::::::::
CCDS60 GHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRI
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB9 RQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGG
:::. :: : .: : . :::.:::::.:::::::..::.::: : : :
CCDS60 RQTMMRGTGMIGYFGHSLGQE--QTIVLPAQGMIEFRDALVQLIEDYGEGDIEERRG---
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB9 GAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWG
: : :::::::. ::.:::.:::: ::::.::.::::.: :::.::::::::
CCDS60 GDDDP-----LELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEVRPPYRNTITVPFKAWT
260 270 280 290 300
270 280 290 300 310
pF1KB9 KFGGAFCRYADEMKEIQERQRDKLYERRGGGSGGGEESEGEEVDED
.:: : .: .::..: . ...: : : ...:::.:
CCDS60 RFGENFIKYEEEMRKICNSHKEK---RMDGRKASGEEQECLD
310 320 330 340
>>CCDS34878.1 PURG gene_id:29942|Hs108|chr8 (322 aa)
initn: 855 init1: 205 opt: 349 Z-score: 327.7 bits: 68.8 E(32554): 6.2e-12
Smith-Waterman score: 761; 53.1% identity (70.4% similar) in 260 aa overlap (23-256:49-298)
10 20 30 40 50
pF1KB9 MADGDSGSERGGGGGPCGFQPASRGGGEQETQELASKRLDIQNKRFYLDVKQ
...:: : :::::::.:::.:::::::::
CCDS34 NVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELASKRVDIQKKRFYLDVKQ
20 30 40 50 60 70
60 70 80 90 100
pF1KB9 NAKGRFLKIAEVGAGGS------KSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLA
...::::::::: : . ::.::::..::::..: :::::::::.:: .. .:
CCDS34 SSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLGDFIEHYAHLGLKGHRQEH
80 90 100 110 120 130
110 120 130 140
pF1KB9 AGAEEGGGPRR--------------------ALKSEFLVRENRKYYLDLKENQRGRFLRI
. ..: :. :: .::.... :.:::::::::::::::::::
CCDS34 GHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRI
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB9 RQTVNRGGGGFGAGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGEDDELAGGPGG
:::. :: : .: : . :::.:::::.:::::::..::.::: : : :
CCDS34 RQTMMRGTGMIGYFGHSLGQE--QTIVLPAQGMIEFRDALVQLIEDYGEGDIEER---RG
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB9 GAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWG
: : :::::::. ::.:::.:::: ::::.::.... : .:
CCDS34 GDDDPL-----ELPEGTSFRVDNKRFYFDVGSNKYGIFLKLTNYPKSRENINLFHCCQIK
260 270 280 290 300
270 280 290 300 310
pF1KB9 KFGGAFCRYADEMKEIQERQRDKLYERRGGGSGGGEESEGEEVDED
CCDS34 HKEQPHDTTKTVEE
310 320
312 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:28:04 2016 done: Fri Nov 4 19:28:04 2016
Total Scan time: 2.660 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]