FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9829, 340 aa
  1>>>pF1KB9829 340 - 340 aa - 340 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2485+/-0.000719; mu= 4.0679+/- 0.043
 mean_var=169.9488+/-35.360, 0's: 0 Z-trim(115.9): 4  B-trim: 0 in 0/51
 Lambda= 0.098382
 statistics sampled from 16464 (16468) to 16464 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.506), width:  16
 Scan time:  3.330

The best scores are:                                      opt bits E(32554)
CCDS73120.1 ZNF488 gene_id:118738|Hs108|chr10      ( 340) 2365 346.9 1.4e-95
CCDS43243.1 PRDM8 gene_id:56978|Hs108|chr4         ( 689)  497 82.0 1.6e-15


>>CCDS73120.1 ZNF488 gene_id:118738|Hs108|chr10           (340 aa)
 initn: 2365 init1: 2365 opt: 2365  Z-score: 1829.5  bits: 346.9 E(32554): 1.4e-95
Smith-Waterman score: 2365; 100.0% identity (100.0% similar) in 340 aa overlap (1-340:1-340)

               10        20        30        40        50        60
pF1KB9 MPEWPPCLSVAPALVITMAAGKGAPLSPSAENRWRLSEPELGRGCKPVLLEKTNRLGPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MPEWPPCLSVAPALVITMAAGKGAPLSPSAENRWRLSEPELGRGCKPVLLEKTNRLGPEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 AVGRAGRDVGSAELALLVAPGKPRPGKPLPPKTRGEQRQSAFTELPRMKDRQVDAQAQER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AVGRAGRDVGSAELALLVAPGKPRPGKPLPPKTRGEQRQSAFTELPRMKDRQVDAQAQER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EHDDPTGQPGAPQLTQNIPRGPAGSKVFSVWPSGARSEQRSAFSKPTKRPAERPELTSVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EHDDPTGQPGAPQLTQNIPRGPAGSKVFSVWPSGARSEQRSAFSKPTKRPAERPELTSVF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PAGESADALGELSGLLNTTDLACWGRLSTPKLLVGDLWNLQALPQNAPLCSTFLGAPTLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PAGESADALGELSGLLNTTDLACWGRLSTPKLLVGDLWNLQALPQNAPLCSTFLGAPTLW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LEHTQAQVPPPSSSSTTSWALLPPTLTSLGLSTQNWCAKCNLSFRLTSDLVFHMRSHHKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LEHTQAQVPPPSSSSTTSWALLPPTLTSLGLSTQNWCAKCNLSFRLTSDLVFHMRSHHKK
              250       260       270       280       290       300

              310       320       330       340
pF1KB9 EHAGPDPHSQKRREEALACPVCQEHFRERHHLSRHMTSHS
       ::::::::::::::::::::::::::::::::::::::::
CCDS73 EHAGPDPHSQKRREEALACPVCQEHFRERHHLSRHMTSHS
              310       320       330       340

>>CCDS43243.1 PRDM8 gene_id:56978|Hs108|chr4              (689 aa)
 initn: 465 init1: 249 opt: 497  Z-score: 392.1  bits: 82.0 E(32554): 1.6e-15
Smith-Waterman score: 515; 35.6% identity (55.7% similar) in 343 aa overlap (24-340:372-689)

                      10        20        30        40        50   
pF1KB9        MPEWPPCLSVAPALVITMAAGKGAPLSPSAENRWRLSEPELGRGCKPVLLEK-
                                     :: :: . .  : .  :. .. . . :.. 
CCDS43 PASKEDLVCTPQQYRASGSYFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEE
             350       360       370       380       390       400 

               60        70        80             90         100   
pF1KB9 --TNRLGPEAAVGRAGRDVGSAELALLVAPGK-----PRPGKPLPPKTRG--EQRQSAFT
         ..  :  .    ::   ::.  :     :      :::: ::: . .:    : ::::
CCDS43 GTADGAGVASEDQDAGGGGGSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFT
             410       420       430       440       450       460 

           110       120       130       140       150       160   
pF1KB9 ELPRMKDRQVDAQAQEREHDDPTGQPGAPQLTQNIPRGPAGSKVFSVWPSGARSEQR-SA
        .:..      ..:        ::  .:         : ::.       .:: :..: ::
CCDS43 SVPQL------GSAGSTSGGGGTGAGAA---------GGAGG------GQGAASDERKSA
                   470       480                      490       500

            170             180       190       200        210     
pF1KB9 FSKPTKRPAE-RP-----ELTSVFPAGESADALGELSGLLNTTD-LACWGRLSTPKLLVG
       ::.:..  ..  :     .: .. :  . ::..:       ..: ::   .:.    : :
CCDS43 FSQPARSFSQLSPLVLGQKLGALEPC-HPADGVGPTRLYPAAADPLAV--KLQGAADLNG
              510       520        530       540         550       

         220       230       240       250               260       
pF1KB9 DLWNLQALPQNAPLCSTFLGAPTLWLEHTQAQVPPPSSSST--------TSWALLPPTLT
          .: .   . :  : :: : ..: . . : .   .....        .. .::::..:
CCDS43 GCGSLPSGGGGLPKQSPFLYATAFWPKSSAAAAAAAAAAAAGPLQLQLPSALTLLPPSFT
       560       570       580       590       600       610       

       270       280       290       300       310       320       
pF1KB9 SLGLSTQNWCAKCNLSFRLTSDLVFHMRSHHKKEHAGPDPHSQKRREEALACPVCQEHFR
       :: : .:::::::: :::.:::::.:::::::::.:  .:  ..:::: : ::.:.: ::
CCDS43 SLCLPAQNWCAKCNASFRMTSDLVYHMRSHHKKEYAM-EPLVKRRREEKLKCPICNESFR
       620       630       640       650        660       670      

       330       340
pF1KB9 ERHHLSRHMTSHS
       ::::::::::::.
CCDS43 ERHHLSRHMTSHN
        680         




340 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:32:09 2016 done: Fri Nov  4 19:32:09 2016
 Total Scan time:  3.330 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]