FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9833, 345 aa
  1>>>pF1KB9833 345 - 345 aa - 345 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3705+/-0.000901; mu= -5.1335+/- 0.055
 mean_var=268.9228+/-53.870, 0's: 0 Z-trim(115.4): 16  B-trim: 0 in 0/54
 Lambda= 0.078210
 statistics sampled from 15997 (16008) to 15997 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.492), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS11576.1 TOB1 gene_id:10140|Hs108|chr17         ( 345) 2334 275.8 3.6e-74
CCDS14015.1 TOB2 gene_id:10766|Hs108|chr22         ( 344) 1159 143.2   3e-34


>>CCDS11576.1 TOB1 gene_id:10140|Hs108|chr17              (345 aa)
 initn: 2334 init1: 2334 opt: 2334  Z-score: 1445.0  bits: 275.8 E(32554): 3.6e-74
Smith-Waterman score: 2334; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)

               10        20        30        40        50        60
pF1KB9 MQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLYVDDNNEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLYVDDNNEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 GCELDKEIKNSFNPEAQVFMPISDPASSVSSSPSPPFGHSAAVSPTFMPRSTQPLTFTTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GCELDKEIKNSFNPEAQVFMPISDPASSVSSSPSPPFGHSAAVSPTFMPRSTQPLTFTTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 TFAATKFGSTKMKNSGRSNKVARTSPINLGLNVNDLLKQKAISSSMHSLYGLGLGSQQQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TFAATKFGSTKMKNSGRSNKVARTSPINLGLNVNDLLKQKAISSSMHSLYGLGLGSQQQP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 QQQQQPAQPPPPPPPPQQQQQQKTSALSPNAKEFIFPNMQGQGSSTNGMFPGDSPLNLSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QQQQQPAQPPPPPPPPQQQQQQKTSALSPNAKEFIFPNMQGQGSSTNGMFPGDSPLNLSP
              250       260       270       280       290       300

              310       320       330       340     
pF1KB9 LQYSNAFDVFAAYGGLNEKSFVDGLNFSLNNMQYSNQQFQPVMAN
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LQYSNAFDVFAAYGGLNEKSFVDGLNFSLNNMQYSNQQFQPVMAN
              310       320       330       340     

>>CCDS14015.1 TOB2 gene_id:10766|Hs108|chr22              (344 aa)
 initn: 1084 init1: 680 opt: 1159  Z-score: 728.5  bits: 143.2 E(32554): 3e-34
Smith-Waterman score: 1197; 55.7% identity (73.5% similar) in 377 aa overlap (1-345:1-344)

               10        20        30        40        50        60
pF1KB9 MQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHI
       :::::.::::::::::::::::::...:::::::::::::::::::::: :::::::.::
CCDS14 MQLEIKVALNFIISYLYNKLPRRRADLFGEELERLLKKKYEGHWYPEKPLKGSGFRCVHI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLYVDDNNEN
       :: ::::.: :.:.::: ..:::.:.:..:::::::::::::::::: :::::.::..  
CCDS14 GEMVDPVVELAAKRSGLAVEDVRANVPEELSVWIDPFEVSYQIGEKGAVKVLYLDDSE--
               70        80        90       100       110          

                 130       140       150       160       170       
pF1KB9 GC---ELDKEIKNSFNPEAQVFMPISDPASSVSSSPSPPFGHSAAVSPTFMPRSTQPLTF
       ::   :::::::.::::.::::.::..  ::.:.:::: ::.:   ::::.:::.::.::
CCDS14 GCGAPELDKEIKSSFNPDAQVFVPIGSQDSSLSNSPSPSFGQSP--SPTFIPRSAQPITF
      120       130       140       150       160         170      

       180       190       200                   210       220     
pF1KB9 TTATFAATKFGSTKMKNSGRSNK---VARTS---------PINLGLNVNDLLKQKAISSS
       :::.::::::::::::..: . .   :: ..         :      .:.:::.:..: :
CCDS14 TTASFAATKFGSTKMKKGGGAASGGGVASSGAGGQQPPQQPRMARSPTNSLLKHKSLSLS
        180       190       200       210       220       230      

         230       240       250       260       270               
pF1KB9 MHSLYGLGLGSQQQPQQQQQPAQPPPPPPPPQQQQQQKTSALSPNAKEFIF-----PNM-
       ::::  .  .                  : ::.:       ::::::::..     :.. 
CCDS14 MHSLNFITAN------------------PAPQSQ-------LSPNAKEFVYNGGGSPSLF
        240                         250              260       270 

         280       290       300       310             320         
pF1KB9 ----QGQGSSTNGMFPGDSPLNLSPLQYSNAFDVFAAYGG------LNEKSFVDGLNFSL
           .::::.: : : :..  . .    :..::.  ..::      :..  ::.::...:
CCDS14 FDAADGQGSGTPGPFGGSGAGTCN----SSSFDMAQVFGGGANSLFLEKTPFVEGLSYNL
             280       290           300       310       320       

     330       340      
pF1KB9 NNMQYSNQQFQPV-MAN
       :.::: .:::::: .::
CCDS14 NTMQYPSQQFQPVVLAN
       330       340    




345 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:34:24 2016 done: Fri Nov  4 19:34:24 2016
 Total Scan time:  2.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]