FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9834, 346 aa
  1>>>pF1KB9834 346 - 346 aa - 346 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.2608+/-0.000569; mu= -34.6363+/- 0.033
 mean_var=950.8150+/-218.233, 0's: 0 Z-trim(117.2): 167  B-trim: 0 in 0/54
 Lambda= 0.041594
 statistics sampled from 28917 (29060) to 28917 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.341), width:  16
 Scan time:  7.900

The best scores are:                                      opt bits E(85289)
NP_005363 (OMIM: 190060) proto-oncogene serine/thr ( 346) 2332 155.9 1.2e-37


>>NP_005363 (OMIM: 190060) proto-oncogene serine/threoni  (346 aa)
 initn: 2332 init1: 2332 opt: 2332  Z-score: 797.0  bits: 155.9 E(85289): 1.2e-37
Smith-Waterman score: 2332; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KB9 MPSPLALRPYLRSEFSPSVDARPCSSPSELPAKLLLGATLPRAPRLPRRLAWCSIDWEQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPSPLALRPYLRSEFSPSVDARPCSSPSELPAKLLLGATLPRAPRLPRRLAWCSIDWEQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CLLQRLGAGGFGSVYKATYRGVPVAIKQVNKCTKNRLASRRSFWAELNVARLRHDNIVRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 CLLQRLGAGGFGSVYKATYRGVPVAIKQVNKCTKNRLASRRSFWAELNVARLRHDNIVRV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VAASTRTPAGSNSLGTIIMEFGGNVTLHQVIYGAAGHPEGDAGEPHCRTGGQLSLGKCLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VAASTRTPAGSNSLGTIIMEFGGNVTLHQVIYGAAGHPEGDAGEPHCRTGGQLSLGKCLK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 YSLDVVNGLLFLHSQSIVHLDLKPANILISEQDVCKISDFGCSEKLEDLLCFQTPSYPLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YSLDVVNGLLFLHSQSIVHLDLKPANILISEQDVCKISDFGCSEKLEDLLCFQTPSYPLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 GTYTHRAPELLKGEGVTPKADIYSFAITLWQMTTKQAPYSGERQHILYAVVAYDLRPSLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GTYTHRAPELLKGEGVTPKADIYSFAITLWQMTTKQAPYSGERQHILYAVVAYDLRPSLS
              250       260       270       280       290       300

              310       320       330       340      
pF1KB9 AAVFEDSLPGQRLGDVIQRCWRPSAAQRPSARLLLVDLTSLKAELG
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AAVFEDSLPGQRLGDVIQRCWRPSAAQRPSARLLLVDLTSLKAELG
              310       320       330       340      




346 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:34:54 2016 done: Fri Nov  4 19:34:55 2016
 Total Scan time:  7.900 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]