Result of FASTA (omim) for
pF1KB9835
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9835, 350 aa
1>>>pF1KB9835 350 - 350 aa - 350 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6487+/-0.000527; mu= 20.6828+/- 0.033
mean_var=113.2995+/-29.521, 0's: 0 Z-trim(109.1): 639 B-trim: 1022 in 1/48
Lambda= 0.120493
statistics sampled from 16526 (17267) to 16526 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.544), E-opt: 0.2 (0.202), width: 16
Scan time: 7.030
The best scores are: opt bits E(85289)
NP_000625 (OMIM: 146929,609423) C-X-C chemokine re ( 350) 2328 416.4 4.7e-116
XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 1767 318.9 1.1e-86
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 1767 318.9 1.1e-86
NP_001548 (OMIM: 146928) C-X-C chemokine receptor ( 360) 1767 318.9 1.1e-86
XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 1767 318.9 1.1e-86
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 1767 318.9 1.1e-86
NP_001161770 (OMIM: 146928) C-X-C chemokine recept ( 360) 1767 318.9 1.1e-86
NP_004358 (OMIM: 601835) C-C chemokine receptor ty ( 374) 877 164.2 4.1e-40
NP_113597 (OMIM: 601835) C-C chemokine receptor ty ( 374) 877 164.2 4.1e-40
NP_001495 (OMIM: 300574) C-X-C chemokine receptor ( 368) 791 149.2 1.3e-35
XP_005262313 (OMIM: 300574) PREDICTED: C-X-C chemo ( 378) 791 149.3 1.3e-35
NP_001136269 (OMIM: 300574) C-X-C chemokine recept ( 415) 791 149.3 1.4e-35
XP_016884924 (OMIM: 300574) PREDICTED: C-X-C chemo ( 415) 791 149.3 1.4e-35
NP_005499 (OMIM: 604836) C-C chemokine receptor ty ( 360) 775 146.4 8.8e-35
XP_016861176 (OMIM: 604836) PREDICTED: C-C chemoki ( 360) 775 146.4 8.8e-35
NP_001707 (OMIM: 601613) C-X-C chemokine receptor ( 372) 754 142.8 1.1e-33
NP_001008540 (OMIM: 162643,193670) C-X-C chemokine ( 356) 751 142.3 1.6e-33
NP_003458 (OMIM: 162643,193670) C-X-C chemokine re ( 352) 745 141.2 3.2e-33
NP_116743 (OMIM: 601613) C-X-C chemokine receptor ( 327) 743 140.8 4e-33
NP_001243298 (OMIM: 604738) C-C chemokine receptor ( 357) 737 139.8 8.6e-33
NP_006632 (OMIM: 604738) C-C chemokine receptor ty ( 357) 737 139.8 8.6e-33
XP_011531614 (OMIM: 604738) PREDICTED: C-C chemoki ( 369) 737 139.9 8.7e-33
NP_112477 (OMIM: 604738) C-C chemokine receptor ty ( 369) 737 139.9 8.7e-33
NP_005192 (OMIM: 601834) C-C chemokine receptor ty ( 355) 717 136.4 9.5e-32
NP_001288647 (OMIM: 600242) C-C chemokine receptor ( 372) 715 136.0 1.2e-31
NP_001288646 (OMIM: 600242) C-C chemokine receptor ( 372) 715 136.0 1.2e-31
NP_001288645 (OMIM: 600242) C-C chemokine receptor ( 372) 715 136.0 1.2e-31
NP_001829 (OMIM: 600242) C-C chemokine receptor ty ( 378) 715 136.1 1.3e-31
NP_001288643 (OMIM: 600242) C-C chemokine receptor ( 315) 710 135.1 2.1e-31
XP_011532371 (OMIM: 601267) PREDICTED: C-C chemoki ( 360) 697 132.9 1.1e-30
NP_001116868 (OMIM: 601267) C-C chemokine receptor ( 360) 697 132.9 1.1e-30
NP_001287 (OMIM: 602648) atypical chemokine recept ( 384) 696 132.8 1.2e-30
NP_001116513 (OMIM: 601267) C-C chemokine receptor ( 374) 695 132.6 1.4e-30
NP_001093638 (OMIM: 601373,609532,610379,612522) C ( 352) 668 127.8 3.5e-29
NP_000570 (OMIM: 601373,609532,610379,612522) C-C ( 352) 668 127.8 3.5e-29
NP_057641 (OMIM: 606065) atypical chemokine recept ( 350) 656 125.7 1.5e-28
NP_848540 (OMIM: 606065) atypical chemokine recept ( 350) 656 125.7 1.5e-28
NP_001286 (OMIM: 601159) C-C chemokine receptor ty ( 355) 652 125.1 2.4e-28
XP_006713023 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 647 124.2 4.4e-28
NP_001828 (OMIM: 601268) C-C chemokine receptor ty ( 355) 647 124.2 4.4e-28
NP_847899 (OMIM: 601268) C-C chemokine receptor ty ( 355) 647 124.2 4.4e-28
XP_011531637 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 647 124.2 4.4e-28
NP_001158152 (OMIM: 601268) C-C chemokine receptor ( 373) 647 124.2 4.5e-28
NP_847898 (OMIM: 601268) C-C chemokine receptor ty ( 376) 647 124.2 4.5e-28
XP_016861175 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 647 124.3 4.7e-28
XP_016861174 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 647 124.3 4.7e-28
XP_016860005 (OMIM: 610376) PREDICTED: atypical ch ( 362) 612 118.1 3e-26
NP_064707 (OMIM: 610376) atypical chemokine recept ( 362) 612 118.1 3e-26
XP_005246155 (OMIM: 610376) PREDICTED: atypical ch ( 362) 612 118.1 3e-26
XP_005246154 (OMIM: 610376) PREDICTED: atypical ch ( 362) 612 118.1 3e-26
>>NP_000625 (OMIM: 146929,609423) C-X-C chemokine recept (350 aa)
initn: 2328 init1: 2328 opt: 2328 Z-score: 2204.5 bits: 416.4 E(85289): 4.7e-116
Smith-Waterman score: 2328; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)
10 20 30 40 50 60
pF1KB9 MSNITDPQMWDFDDLNFTGMPPADEDYSPCMLETETLNKYVVIIAYALVFLLSLLGNSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSNITDPQMWDFDDLNFTGMPPADEDYSPCMLETETLNKYVVIIAYALVFLLSLLGNSLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 MLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCKVVSLLKEVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCKVVSLLKEVN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 FYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 NNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHMGQKHRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAHMGQKHRA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 MRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCL
250 260 270 280 290 300
310 320 330 340 350
pF1KB9 NPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYTSSSVNVSSNL
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYTSSSVNVSSNL
310 320 330 340 350
>>XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemokine (360 aa)
initn: 1757 init1: 1757 opt: 1767 Z-score: 1677.4 bits: 318.9 E(85289): 1.1e-86
Smith-Waterman score: 1767; 78.0% identity (90.5% similar) in 346 aa overlap (10-350:15-360)
10 20 30 40 50
pF1KB9 MSNITDPQMWDFDDL-NFT---GMPPADEDYSPCMLETETLNKYVVIIAYALVFL
: .:: :.. .:: : .:: :. .::: :.: ::::::
XP_016 MEDFNMESDSFEDFWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYALVFL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPF
:::::::::::::::::::::::::::::::::::::::.::::.::. ::::. :.::
XP_016 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRYLVKFICLSIWGLSLLLALPV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 FLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFK
.:::.. . .: ::.::: .::.::.:::.:::::..:::::::..::::::::::::::
XP_016 LLFRRTVYSSNVSPACYEDMGNNTANWRMLLRILPQSFGFIVPLLIMLFCYGFTLRTLFK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATE
::::::::::::::::::::::::::::::::::::::::::::.:::::.: :::::::
XP_016 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRNHIDRALDATE
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 ILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYT-SSSVNVSSNL
:::.:::::::.:::::::.::::.:::::.:::.::. : . :.. ::: ..:..:
XP_016 ILGILHSCLNPLIYAFIGQKFRHGLLKILAIHGLISKDSLPKDSRPSFVGSSSGHTSTTL
310 320 330 340 350 360
>>XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemokine (360 aa)
initn: 1757 init1: 1757 opt: 1767 Z-score: 1677.4 bits: 318.9 E(85289): 1.1e-86
Smith-Waterman score: 1767; 78.0% identity (90.5% similar) in 346 aa overlap (10-350:15-360)
10 20 30 40 50
pF1KB9 MSNITDPQMWDFDDL-NFT---GMPPADEDYSPCMLETETLNKYVVIIAYALVFL
: .:: :.. .:: : .:: :. .::: :.: ::::::
XP_005 MEDFNMESDSFEDFWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYALVFL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPF
:::::::::::::::::::::::::::::::::::::::.::::.::. ::::. :.::
XP_005 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRYLVKFICLSIWGLSLLLALPV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 FLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFK
.:::.. . .: ::.::: .::.::.:::.:::::..:::::::..::::::::::::::
XP_005 LLFRRTVYSSNVSPACYEDMGNNTANWRMLLRILPQSFGFIVPLLIMLFCYGFTLRTLFK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATE
::::::::::::::::::::::::::::::::::::::::::::.:::::.: :::::::
XP_005 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRNHIDRALDATE
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 ILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYT-SSSVNVSSNL
:::.:::::::.:::::::.::::.:::::.:::.::. : . :.. ::: ..:..:
XP_005 ILGILHSCLNPLIYAFIGQKFRHGLLKILAIHGLISKDSLPKDSRPSFVGSSSGHTSTTL
310 320 330 340 350 360
>>NP_001548 (OMIM: 146928) C-X-C chemokine receptor type (360 aa)
initn: 1757 init1: 1757 opt: 1767 Z-score: 1677.4 bits: 318.9 E(85289): 1.1e-86
Smith-Waterman score: 1767; 78.0% identity (90.5% similar) in 346 aa overlap (10-350:15-360)
10 20 30 40 50
pF1KB9 MSNITDPQMWDFDDL-NFT---GMPPADEDYSPCMLETETLNKYVVIIAYALVFL
: .:: :.. .:: : .:: :. .::: :.: ::::::
NP_001 MEDFNMESDSFEDFWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYALVFL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPF
:::::::::::::::::::::::::::::::::::::::.::::.::. ::::. :.::
NP_001 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRYLVKFICLSIWGLSLLLALPV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 FLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFK
.:::.. . .: ::.::: .::.::.:::.:::::..:::::::..::::::::::::::
NP_001 LLFRRTVYSSNVSPACYEDMGNNTANWRMLLRILPQSFGFIVPLLIMLFCYGFTLRTLFK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATE
::::::::::::::::::::::::::::::::::::::::::::.:::::.: :::::::
NP_001 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRNHIDRALDATE
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 ILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYT-SSSVNVSSNL
:::.:::::::.:::::::.::::.:::::.:::.::. : . :.. ::: ..:..:
NP_001 ILGILHSCLNPLIYAFIGQKFRHGLLKILAIHGLISKDSLPKDSRPSFVGSSSGHTSTTL
310 320 330 340 350 360
>>XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemokine (360 aa)
initn: 1757 init1: 1757 opt: 1767 Z-score: 1677.4 bits: 318.9 E(85289): 1.1e-86
Smith-Waterman score: 1767; 78.0% identity (90.5% similar) in 346 aa overlap (10-350:15-360)
10 20 30 40 50
pF1KB9 MSNITDPQMWDFDDL-NFT---GMPPADEDYSPCMLETETLNKYVVIIAYALVFL
: .:: :.. .:: : .:: :. .::: :.: ::::::
XP_016 MEDFNMESDSFEDFWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYALVFL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPF
:::::::::::::::::::::::::::::::::::::::.::::.::. ::::. :.::
XP_016 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRYLVKFICLSIWGLSLLLALPV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 FLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFK
.:::.. . .: ::.::: .::.::.:::.:::::..:::::::..::::::::::::::
XP_016 LLFRRTVYSSNVSPACYEDMGNNTANWRMLLRILPQSFGFIVPLLIMLFCYGFTLRTLFK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATE
::::::::::::::::::::::::::::::::::::::::::::.:::::.: :::::::
XP_016 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRNHIDRALDATE
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 ILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYT-SSSVNVSSNL
:::.:::::::.:::::::.::::.:::::.:::.::. : . :.. ::: ..:..:
XP_016 ILGILHSCLNPLIYAFIGQKFRHGLLKILAIHGLISKDSLPKDSRPSFVGSSSGHTSTTL
310 320 330 340 350 360
>>XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemokine (360 aa)
initn: 1757 init1: 1757 opt: 1767 Z-score: 1677.4 bits: 318.9 E(85289): 1.1e-86
Smith-Waterman score: 1767; 78.0% identity (90.5% similar) in 346 aa overlap (10-350:15-360)
10 20 30 40 50
pF1KB9 MSNITDPQMWDFDDL-NFT---GMPPADEDYSPCMLETETLNKYVVIIAYALVFL
: .:: :.. .:: : .:: :. .::: :.: ::::::
XP_016 MEDFNMESDSFEDFWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYALVFL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPF
:::::::::::::::::::::::::::::::::::::::.::::.::. ::::. :.::
XP_016 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRYLVKFICLSIWGLSLLLALPV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 FLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFK
.:::.. . .: ::.::: .::.::.:::.:::::..:::::::..::::::::::::::
XP_016 LLFRRTVYSSNVSPACYEDMGNNTANWRMLLRILPQSFGFIVPLLIMLFCYGFTLRTLFK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATE
::::::::::::::::::::::::::::::::::::::::::::.:::::.: :::::::
XP_016 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRNHIDRALDATE
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 ILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYT-SSSVNVSSNL
:::.:::::::.:::::::.::::.:::::.:::.::. : . :.. ::: ..:..:
XP_016 ILGILHSCLNPLIYAFIGQKFRHGLLKILAIHGLISKDSLPKDSRPSFVGSSSGHTSTTL
310 320 330 340 350 360
>>NP_001161770 (OMIM: 146928) C-X-C chemokine receptor t (360 aa)
initn: 1757 init1: 1757 opt: 1767 Z-score: 1677.4 bits: 318.9 E(85289): 1.1e-86
Smith-Waterman score: 1767; 78.0% identity (90.5% similar) in 346 aa overlap (10-350:15-360)
10 20 30 40 50
pF1KB9 MSNITDPQMWDFDDL-NFT---GMPPADEDYSPCMLETETLNKYVVIIAYALVFL
: .:: :.. .:: : .:: :. .::: :.: ::::::
NP_001 MEDFNMESDSFEDFWKGEDLSNYSYSSTLPPFLLDAAPCEPESLEINKYFVVIIYALVFL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLCK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPF
:::::::::::::::::::::::::::::::::::::::.::::.::. ::::. :.::
NP_001 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRYLVKFICLSIWGLSLLLALPV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 FLFRQAYHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFK
.:::.. . .: ::.::: .::.::.:::.:::::..:::::::..::::::::::::::
NP_001 LLFRRTVYSSNVSPACYEDMGNNTANWRMLLRILPQSFGFIVPLLIMLFCYGFTLRTLFK
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATE
::::::::::::::::::::::::::::::::::::::::::::.:::::.: :::::::
NP_001 AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQETCERRNHIDRALDATE
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 ILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYT-SSSVNVSSNL
:::.:::::::.:::::::.::::.:::::.:::.::. : . :.. ::: ..:..:
NP_001 ILGILHSCLNPLIYAFIGQKFRHGLLKILAIHGLISKDSLPKDSRPSFVGSSSGHTSTTL
310 320 330 340 350 360
>>NP_004358 (OMIM: 601835) C-C chemokine receptor type 6 (374 aa)
initn: 808 init1: 232 opt: 877 Z-score: 841.1 bits: 164.2 E(85289): 4.1e-40
Smith-Waterman score: 877; 42.5% identity (75.5% similar) in 327 aa overlap (2-320:9-331)
10 20 30 40 50
pF1KB9 MSNITDPQMWDFDDLNFTGMPPADEDYSPCML-ETETLNKYVVIIAYALVFLL
:.. : . : ..: :.. .: .. : : :.. ... : :::.:. ..
NP_004 MSGESMNFSDVFDSSEDYFVSVN-TSYYSVDSEMLLCSLQEVRQFSRLFVPIAYSLICVF
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 SLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNG-WIFGTFLCK
.:::: ::.... . . .::.:::::::.:.::.::.::::.::.:...: :.:.. ::
NP_004 GLLGNILVVITFAFYKKARSMTDVYLLNMAIADILFVLTLPFWAVSHATGAWVFSNATCK
60 70 80 90 100 110
120 130 140 150 160
pF1KB9 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLV---KFVCLGCWGLSMNLS
... . .:: :.:::.:::.:::.:::.::... . . . :..:: ::::. .:
NP_004 LLKGIYAINFNCGMLLLTCISMDRYIAIVQATKSFRLRSRTLPRSKIICLVVWGLSVIIS
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB9 LPFFLFRQAYHPNNSSPVC---YEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFT
:.: : :. ...: :: :... .. .:.... : :::..::. :.::: :
NP_004 SSTFVFNQKYN-TQGSDVCEPKYQTV-SEPIRWKLLMLGLELLFGFFIPLMFMIFCYTFI
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB9 LRTLFKAHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGR
..:: .:. ...:.:.:::.::::.:: : .:.:.:::. : ...::. .. ::
NP_004 VKTLVQAQNSKRHKAIRVIIAVVLVFLACQIPHNMVLLV-TAANLGKMNRSCQSEKLIGY
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB9 ALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYTSSSVN
. .::.:.::: ::::..::::::.::. :::::
NP_004 TKTVTEVLAFLHCCLNPVLYAFIGQKFRNYFLKILKDLWCVRRKYKSSGFSCAGRYSENI
300 310 320 330 340 350
350
pF1KB9 VSSNL
NP_004 SRQTSETADNDNASSFTM
360 370
>>NP_113597 (OMIM: 601835) C-C chemokine receptor type 6 (374 aa)
initn: 808 init1: 232 opt: 877 Z-score: 841.1 bits: 164.2 E(85289): 4.1e-40
Smith-Waterman score: 877; 42.5% identity (75.5% similar) in 327 aa overlap (2-320:9-331)
10 20 30 40 50
pF1KB9 MSNITDPQMWDFDDLNFTGMPPADEDYSPCML-ETETLNKYVVIIAYALVFLL
:.. : . : ..: :.. .: .. : : :.. ... : :::.:. ..
NP_113 MSGESMNFSDVFDSSEDYFVSVN-TSYYSVDSEMLLCSLQEVRQFSRLFVPIAYSLICVF
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 SLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNG-WIFGTFLCK
.:::: ::.... . . .::.:::::::.:.::.::.::::.::.:...: :.:.. ::
NP_113 GLLGNILVVITFAFYKKARSMTDVYLLNMAIADILFVLTLPFWAVSHATGAWVFSNATCK
60 70 80 90 100 110
120 130 140 150 160
pF1KB9 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLV---KFVCLGCWGLSMNLS
... . .:: :.:::.:::.:::.:::.::... . . . :..:: ::::. .:
NP_113 LLKGIYAINFNCGMLLLTCISMDRYIAIVQATKSFRLRSRTLPRSKIICLVVWGLSVIIS
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB9 LPFFLFRQAYHPNNSSPVC---YEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFT
:.: : :. ...: :: :... .. .:.... : :::..::. :.::: :
NP_113 SSTFVFNQKYN-TQGSDVCEPKYQTV-SEPIRWKLLMLGLELLFGFFIPLMFMIFCYTFI
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB9 LRTLFKAHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGR
..:: .:. ...:.:.:::.::::.:: : .:.:.:::. : ...::. .. ::
NP_113 VKTLVQAQNSKRHKAIRVIIAVVLVFLACQIPHNMVLLV-TAANLGKMNRSCQSEKLIGY
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB9 ALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYTSSSVN
. .::.:.::: ::::..::::::.::. :::::
NP_113 TKTVTEVLAFLHCCLNPVLYAFIGQKFRNYFLKILKDLWCVRRKYKSSGFSCAGRYSENI
300 310 320 330 340 350
350
pF1KB9 VSSNL
NP_113 SRQTSETADNDNASSFTM
360 370
>>NP_001495 (OMIM: 300574) C-X-C chemokine receptor type (368 aa)
initn: 774 init1: 369 opt: 791 Z-score: 760.3 bits: 149.2 E(85289): 1.3e-35
Smith-Waterman score: 791; 40.2% identity (68.0% similar) in 331 aa overlap (21-348:41-361)
10 20 30 40 50
pF1KB9 MSNITDPQMWDFDDLNFTGMPPADEDYSPCMLETETLNKYVVIIAYALVF
:: .:.: .... . :.:.:
NP_001 LNDAEVAALLENFSSSYDYGENESDSCCTSPPCPQDFS------LNFDRAFLPALYSLLF
20 30 40 50 60
60 70 80 90 100 110
pF1KB9 LLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASKVNGWIFGTFLC
::.::::. : :.: :.. : ::..::.::.:: :..::::.::.. . :.::. ::
NP_001 LLGLLGNGAVAAVLLSRRTALSSTDTFLLHLAVADTLLVLTLPLWAVDAAVQWVFGSGLC
70 80 90 100 110 120
120 130 140 150 160
pF1KB9 KVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHL-VKFVCLGCWGLSMNLSL
::.. : ..:::.: ::::::: :::: :::::. . : ..::. ::: . ..:
NP_001 KVAGALFNINFYAGALLLACISFDRYLNIVHATQLYRRGPPARVTLTCLAVWGLCLLFAL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 PFFLFRQAYHPN--NSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLR
: :.: .:.: . :.. : : : .::.: . ::..::.:: .::. :
NP_001 PDFIFLSAHHDERLNATHCQY----NFPQVGRTALRVLQLVAGFLLPLLVMAYCYAHILA
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB9 TLFKAHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRAL
.:. .. .. ::::.. .::. : ::: ::.::.:.: :: .. ..: :.. . :
NP_001 VLLVSRGQRRLRAMRLVVVVVVAFALCWTPYHLVVLVDILMDLGALARNCGRESRVDVAK
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB9 DATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHGLVSKEFLARHRVTSYTSSSVNVS
..: ::..: ::::..:::.: .::. . .: : ... : :. .: .:: . .
NP_001 SVTSGLGYMHCCLNPLLYAFVGVKFRERMWMLLLRLGCPNQRGLQRQPSSSRRDSSWSET
310 320 330 340 350 360
350
pF1KB9 SNL
:
NP_001 SEASYSGL
350 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:36:00 2016 done: Fri Nov 4 19:36:01 2016
Total Scan time: 7.030 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]