Result of FASTA (omim) for
pF1KB9840
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9840, 356 aa
1>>>pF1KB9840 356 - 356 aa - 356 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1497+/-0.00038; mu= 12.5522+/- 0.024
mean_var=89.4807+/-17.965, 0's: 0 Z-trim(113.5): 140 B-trim: 179 in 1/58
Lambda= 0.135584
statistics sampled from 22747 (22898) to 22747 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.268), width: 16
Scan time: 8.190
The best scores are: opt bits E(85289)
NP_006187 (OMIM: 601209) poly(rC)-binding protein ( 356) 2318 463.6 3e-130
NP_001122383 (OMIM: 601210) poly(rC)-binding prote ( 365) 1889 379.7 5.7e-105
NP_114366 (OMIM: 601210) poly(rC)-binding protein ( 362) 1881 378.1 1.7e-104
NP_001122384 (OMIM: 601210) poly(rC)-binding prote ( 361) 1864 374.8 1.7e-103
NP_005007 (OMIM: 601210) poly(rC)-binding protein ( 366) 1515 306.5 6e-83
NP_001122385 (OMIM: 601210) poly(rC)-binding prote ( 335) 1143 233.7 4.5e-61
NP_001122386 (OMIM: 601210) poly(rC)-binding prote ( 318) 1111 227.5 3.3e-59
NP_001092090 (OMIM: 601210) poly(rC)-binding prote ( 331) 1111 227.5 3.4e-59
NP_065389 (OMIM: 608502) poly(rC)-binding protein ( 371) 1008 207.3 4.3e-53
NP_001123613 (OMIM: 608502) poly(rC)-binding prote ( 345) 918 189.7 8.1e-48
XP_016862407 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323) 797 166.0 1e-40
XP_016862408 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323) 797 166.0 1e-40
XP_016862406 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323) 797 166.0 1e-40
XP_006713334 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 346) 797 166.1 1.1e-40
XP_006713331 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403) 797 166.1 1.2e-40
XP_006713332 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403) 797 166.1 1.2e-40
XP_005265388 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403) 797 166.1 1.2e-40
NP_127501 (OMIM: 608503) poly(rC)-binding protein ( 403) 797 166.1 1.2e-40
NP_127503 (OMIM: 608503) poly(rC)-binding protein ( 403) 797 166.1 1.2e-40
NP_001167571 (OMIM: 608503) poly(rC)-binding prote ( 403) 797 166.1 1.2e-40
XP_016862405 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 426) 797 166.1 1.3e-40
XP_005265387 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 426) 797 166.1 1.3e-40
XP_016862409 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 280) 552 118.1 2.4e-26
NP_065151 (OMIM: 608503) poly(rC)-binding protein ( 360) 552 118.1 3e-26
XP_006713333 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 360) 552 118.1 3e-26
XP_005265389 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 383) 552 118.2 3.2e-26
XP_006713541 (OMIM: 125853,608289) PREDICTED: insu ( 300) 262 61.4 3.1e-09
XP_006713540 (OMIM: 125853,608289) PREDICTED: insu ( 343) 262 61.4 3.4e-09
NP_001305115 (OMIM: 600712,616580) heterogeneous n ( 439) 232 55.6 2.5e-07
XP_016870158 (OMIM: 600712,616580) PREDICTED: hete ( 439) 232 55.6 2.5e-07
XP_011516918 (OMIM: 600712,616580) PREDICTED: hete ( 439) 232 55.6 2.5e-07
NP_001305117 (OMIM: 600712,616580) heterogeneous n ( 463) 232 55.6 2.6e-07
NP_112552 (OMIM: 600712,616580) heterogeneous nucl ( 463) 232 55.6 2.6e-07
XP_016870157 (OMIM: 600712,616580) PREDICTED: hete ( 463) 232 55.6 2.6e-07
XP_005252020 (OMIM: 600712,616580) PREDICTED: hete ( 440) 227 54.6 4.9e-07
XP_005252022 (OMIM: 600712,616580) PREDICTED: hete ( 440) 227 54.6 4.9e-07
NP_001305116 (OMIM: 600712,616580) heterogeneous n ( 440) 227 54.6 4.9e-07
NP_002131 (OMIM: 600712,616580) heterogeneous nucl ( 464) 227 54.6 5.1e-07
XP_005252017 (OMIM: 600712,616580) PREDICTED: hete ( 464) 227 54.6 5.1e-07
NP_112553 (OMIM: 600712,616580) heterogeneous nucl ( 464) 227 54.6 5.1e-07
XP_016870761 (OMIM: 603536) PREDICTED: far upstrea ( 377) 203 49.9 1.1e-05
XP_016870760 (OMIM: 603536) PREDICTED: far upstrea ( 377) 203 49.9 1.1e-05
XP_016870759 (OMIM: 603536) PREDICTED: far upstrea ( 377) 203 49.9 1.1e-05
XP_006717376 (OMIM: 603536) PREDICTED: far upstrea ( 485) 203 49.9 1.4e-05
XP_011517476 (OMIM: 603536) PREDICTED: far upstrea ( 485) 203 49.9 1.4e-05
XP_011517475 (OMIM: 603536) PREDICTED: far upstrea ( 499) 203 49.9 1.4e-05
NP_003925 (OMIM: 603536) far upstream element-bind ( 572) 203 50.0 1.6e-05
XP_016870762 (OMIM: 603536) PREDICTED: far upstrea ( 353) 197 48.7 2.4e-05
XP_016870758 (OMIM: 603536) PREDICTED: far upstrea ( 461) 197 48.8 2.9e-05
XP_005272289 (OMIM: 603536) PREDICTED: far upstrea ( 548) 197 48.8 3.4e-05
>>NP_006187 (OMIM: 601209) poly(rC)-binding protein 1 [H (356 aa)
initn: 2318 init1: 2318 opt: 2318 Z-score: 2459.3 bits: 463.6 E(85289): 3e-130
Smith-Waterman score: 2318; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)
10 20 30 40 50 60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 IPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGA
250 260 270 280 290 300
310 320 330 340 350
pF1KB9 NINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
310 320 330 340 350
>>NP_001122383 (OMIM: 601210) poly(rC)-binding protein 2 (365 aa)
initn: 1881 init1: 1052 opt: 1889 Z-score: 2005.6 bits: 379.7 E(85289): 5.7e-105
Smith-Waterman score: 1896; 82.8% identity (91.6% similar) in 367 aa overlap (1-356:1-365)
10 20 30 40 50 60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
:.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
::::::::::::::::::::::::::::::.:::. :::::::.:::::::::: : :
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV-T
130 140 150 160 170
190 200 210 220 230
pF1KB9 IPYQPMPASSPVICAGGQDRCS---DAAGYPHATH------DLEGPPLDAYSIQGQHTIS
:::.: :.::::: :::::: : :.:..::.: :::::::.::.::::..:
NP_001 IPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB9 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNL
::.::.:.: ::::: : ::.:::.::.::::::::::. ::::.::: :::::::.:
NP_001 QPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWG-LDASAQTTSHELTIPNDL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB9 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE
::::::::::.:::::::::::::::::::::. ::::::::::::::::::::.:::::
NP_001 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE
300 310 320 330 340 350
pF1KB9 KG-MGCS
: :: :
NP_001 TGGMGSS
360
>>NP_114366 (OMIM: 601210) poly(rC)-binding protein 2 is (362 aa)
initn: 1970 init1: 1017 opt: 1881 Z-score: 1997.2 bits: 378.1 E(85289): 1.7e-104
Smith-Waterman score: 1881; 81.7% identity (91.3% similar) in 367 aa overlap (1-356:1-362)
10 20 30 40 50 60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_114 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
:.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_114 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
::::::::::::::::::::::::::::::.:::. :::::::.::::. :.: .:
NP_114 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VT
130 140 150 160 170
190 200 210 220 230
pF1KB9 IPYQPMPASSPVICAGGQDRCS---DAAGYPHATH------DLEGPPLDAYSIQGQHTIS
:::.: :.::::: :::::: : :.:..::.: :::::::.::.::::..:
NP_114 IPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB9 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNL
::.::.:.: ::::: : ::.:::.::.:::::::::::.::::.::: :::::::.:
NP_114 QPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB9 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE
::::::::::.:::::::::::::::::::::. ::::::::::::::::::::.:::::
NP_114 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE
300 310 320 330 340 350
pF1KB9 KG-MGCS
: :: :
NP_114 TGGMGSS
360
>>NP_001122384 (OMIM: 601210) poly(rC)-binding protein 2 (361 aa)
initn: 1846 init1: 1017 opt: 1864 Z-score: 1979.2 bits: 374.8 E(85289): 1.7e-103
Smith-Waterman score: 1864; 81.5% identity (91.0% similar) in 367 aa overlap (1-356:1-361)
10 20 30 40 50 60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
:.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
::::::::::::::::::::::::::::::.:::. :::::::.::::. :.: .:
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VT
130 140 150 160 170
190 200 210 220 230
pF1KB9 IPYQPMPASSPVICAGGQDRCS---DAAGYPHATH------DLEGPPLDAYSIQGQHTIS
:::.: :.::::: :::::: : :.:..::.: :::::::.::.::::..:
NP_001 IPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB9 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNL
::.::.:.: ::::: : ::.:::.::.::::::::::. ::::.::: :::::::.:
NP_001 QPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWG-LDASAQTTSHELTIPNDL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB9 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE
::::::::::.:::::::::::::::::::::. ::::::::::::::::::::.:::::
NP_001 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE
300 310 320 330 340 350
pF1KB9 KG-MGCS
: :: :
NP_001 TGGMGSS
360
>>NP_005007 (OMIM: 601210) poly(rC)-binding protein 2 is (366 aa)
initn: 1895 init1: 1052 opt: 1515 Z-score: 1610.2 bits: 306.5 E(85289): 6e-83
Smith-Waterman score: 1913; 83.1% identity (91.8% similar) in 367 aa overlap (1-356:1-366)
10 20 30 40 50 60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_005 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
:.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_005 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
::::::::::::::::::::::::::::::.:::. :::::::.:::::::::: : :
NP_005 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV-T
130 140 150 160 170
190 200 210 220 230
pF1KB9 IPYQPMPASSPVICAGGQDRCS---DAAGYPHATH------DLEGPPLDAYSIQGQHTIS
:::.: :.::::: :::::: : :.:..::.: :::::::.::.::::..:
NP_005 IPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIP
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB9 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNL
::.::.:.: ::::: : ::.:::.::.:::::::::::.::::.::: :::::::.:
NP_005 QPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB9 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE
::::::::::.:::::::::::::::::::::. ::::::::::::::::::::.:::::
NP_005 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE
300 310 320 330 340 350
pF1KB9 KG-MGCS
: :: :
NP_005 TGGMGSS
360
>>NP_001122385 (OMIM: 601210) poly(rC)-binding protein 2 (335 aa)
initn: 1823 init1: 1052 opt: 1143 Z-score: 1217.5 bits: 233.7 E(85289): 4.5e-61
Smith-Waterman score: 1785; 81.0% identity (88.5% similar) in 358 aa overlap (1-356:1-335)
10 20 30 40 50 60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
:.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
::::::::::::::::::::::::::::::.:::. :::::::.:::::::::: : :
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGV-T
130 140 150 160 170
190 200 210 220 230 240
pF1KB9 IPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQ
:::.: :.::::: :::: ::.::::..: ::.::.:
NP_001 IPYRPKPSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQ
180 190 200 210
250 260 270 280 290
pF1KB9 VARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQG
.: ::::: : ::.:::.::.:::::::::::.::::.::: :::::::.::::::::::
NP_001 LAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQG
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB9 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKG-MGCS
:.:::::::::::::::::::::. ::::::::::::::::::::.::::: : :: :
NP_001 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
280 290 300 310 320 330
>>NP_001122386 (OMIM: 601210) poly(rC)-binding protein 2 (318 aa)
initn: 1746 init1: 1017 opt: 1111 Z-score: 1184.0 bits: 227.5 E(85289): 3.3e-59
Smith-Waterman score: 1629; 76.3% identity (84.4% similar) in 358 aa overlap (1-356:1-318)
10 20 30 40 50 60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
:.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
::::::::::::::::::::::::::::::.:::. :::::::.::::. :.: .:
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VT
130 140 150 160 170
190 200 210 220 230 240
pF1KB9 IPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQ
:::.: :.::::: :::: ::.::::..: ::.::.:
NP_001 IPYRPKPSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQ
180 190 200 210
250 260 270 280 290
pF1KB9 VARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQG
.: ::::: : ::.:::. :.::::.::: :::::::.::::::::::
NP_001 LAMQQSHFPMTHGNTGFS-------------AGLDASAQTTSHELTIPNDLIGCIIGRQG
220 230 240 250 260
300 310 320 330 340 350
pF1KB9 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKG-MGCS
:.:::::::::::::::::::::. ::::::::::::::::::::.::::: : :: :
NP_001 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
270 280 290 300 310
>>NP_001092090 (OMIM: 601210) poly(rC)-binding protein 2 (331 aa)
initn: 1788 init1: 1017 opt: 1111 Z-score: 1183.8 bits: 227.5 E(85289): 3.4e-59
Smith-Waterman score: 1753; 79.6% identity (88.0% similar) in 358 aa overlap (1-356:1-331)
10 20 30 40 50 60
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
:.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
::::::::::::::::::::::::::::::.:::. :::::::.::::. :.: .:
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VT
130 140 150 160 170
190 200 210 220 230 240
pF1KB9 IPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQ
:::.: :.::::: :::: ::.::::..: ::.::.:
NP_001 IPYRPKPSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQ
180 190 200 210
250 260 270 280 290
pF1KB9 VARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQG
.: ::::: : ::.:::.::.:::::::::::.::::.::: :::::::.::::::::::
NP_001 LAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQG
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB9 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKG-MGCS
:.:::::::::::::::::::::. ::::::::::::::::::::.::::: : :: :
NP_001 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
280 290 300 310 320 330
>>NP_065389 (OMIM: 608502) poly(rC)-binding protein 3 is (371 aa)
initn: 1400 init1: 913 opt: 1008 Z-score: 1074.1 bits: 207.3 E(85289): 4.3e-53
Smith-Waterman score: 1421; 66.5% identity (81.0% similar) in 364 aa overlap (1-354:33-369)
10 20 30
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIG
:.. :.:.::::::::::::::::::::::
NP_065 EGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 KKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNS
::::.::..:::::::::::::::::::.:.::::.::::::::: :.:::: .::.::
NP_065 KKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB9 TAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG
:.:.:::::::::::.:::::::::: :::::::::::::::::::::::::::.::.:
NP_065 PATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB9 VPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHA
.:... .::::::.::::. :.: ::::.: :::.::: ::::
NP_065 TPDAIIQCVKQICVVMLES---PPKG--ATIPYRPKPASTPVIFAGGQ------------
190 200 210 220
220 230 240 250 260
pF1KB9 THDLEGPPLDAYSIQGQHTIS-PLDLAKLNQVARQQSHFAMM-HGGTGFAGID---SSSP
::.::::..: : .:.::.:.: ::. : . . . .: : ::
NP_065 ----------AYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSE
230 240 250 260 270
270 280 290 300 310 320
pF1KB9 EVK---GYWASLDASTQ-TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEG
:.. : ..:::: .::::::::.::::::::::..:::::::::::::::: .::
NP_065 EAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEG
280 290 300 310 320 330
330 340 350
pF1KB9 SSGRQVTITGSAASISLAQYLINARLSSE-KGMGCS
:: ::.::::. :.::::::::::::.:: :::
NP_065 SSERQITITGTPANISLAQYLINARLTSEVTGMGTL
340 350 360 370
>>NP_001123613 (OMIM: 608502) poly(rC)-binding protein 3 (345 aa)
initn: 1428 init1: 891 opt: 918 Z-score: 979.5 bits: 189.7 E(85289): 8.1e-48
Smith-Waterman score: 1274; 62.0% identity (75.2% similar) in 363 aa overlap (1-354:33-343)
10 20 30
pF1KB9 MDAGVTESGLNVTLTIRLLMHGKEVGSIIG
:.. :.:.::::::::::::::::::::::
NP_001 EGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 KKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTNS
::::.::..:::::::::::::::::::.:.::::.::::::::: :.:::: .::.::
NP_001 KKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB9 TAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG
:.:.:::::::::::.:::::::::: :::::::::::::::::::::::::::.::.:
NP_001 PATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB9 VPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHA
.:... .::::::.::::
NP_001 TPDAIIQCVKQICVVMLE------------------------------------------
190 200
220 230 240 250 260
pF1KB9 THDLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQSHFAMM-HGGTGFAGID---SSSPE
::.::::..: ::.::.:.: ::. : . . . .: : :: :
NP_001 ----------AYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEE
210 220 230 240 250
270 280 290 300 310 320
pF1KB9 VK---GYWASLDASTQ-TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGS
.. : ..:::: .::::::::.::::::::::..:::::::::::::::: .:::
NP_001 AQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS
260 270 280 290 300 310
330 340 350
pF1KB9 SGRQVTITGSAASISLAQYLINARLSSE-KGMGCS
: ::.::::. :.::::::::::::.:: :::
NP_001 SERQITITGTPANISLAQYLINARLTSEVTGMGTL
320 330 340
356 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:38:25 2016 done: Fri Nov 4 19:38:26 2016
Total Scan time: 8.190 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]