Result of FASTA (ccds) for
pF1KB9841
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9841, 358 aa
1>>>pF1KB9841 358 - 358 aa - 358 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0482+/-0.000779; mu= 18.6117+/- 0.047
mean_var=74.0899+/-14.573, 0's: 0 Z-trim(108.8): 25 B-trim: 22 in 1/51
Lambda= 0.149003
statistics sampled from 10435 (10458) to 10435 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.321), width: 16
Scan time: 2.770
The best scores are: opt bits E(32554)
CCDS929.1 GJA5 gene_id:2702|Hs108|chr1 ( 358) 2469 539.8 1.3e-153
CCDS30834.1 GJA8 gene_id:2703|Hs108|chr1 ( 433) 1032 231.0 1.5e-60
CCDS9289.1 GJA3 gene_id:2700|Hs108|chr13 ( 435) 1023 229.0 5.7e-60
CCDS30669.1 GJA4 gene_id:2701|Hs108|chr1 ( 333) 940 211.1 1.1e-54
CCDS5025.1 GJA10 gene_id:84694|Hs108|chr6 ( 543) 916 206.1 5.7e-53
CCDS432.1 GJA9 gene_id:81025|Hs108|chr1 ( 515) 909 204.6 1.6e-52
CCDS5123.1 GJA1 gene_id:2697|Hs108|chr6 ( 382) 883 198.9 6e-51
CCDS9290.1 GJB2 gene_id:2706|Hs108|chr13 ( 226) 471 110.1 1.8e-24
CCDS9291.1 GJB6 gene_id:10804|Hs108|chr13 ( 261) 466 109.1 4.3e-24
CCDS11487.1 GJC1 gene_id:10052|Hs108|chr17 ( 396) 449 105.6 7.4e-23
CCDS1569.1 GJC2 gene_id:57165|Hs108|chr1 ( 439) 446 105.0 1.3e-22
CCDS14408.1 GJB1 gene_id:2705|Hs108|chrX ( 283) 436 102.7 4e-22
CCDS383.1 GJB4 gene_id:127534|Hs108|chr1 ( 266) 414 97.9 1e-20
CCDS384.1 GJB3 gene_id:2707|Hs108|chr1 ( 270) 414 98.0 1e-20
CCDS10040.1 GJD2 gene_id:57369|Hs108|chr15 ( 321) 403 95.6 6e-20
CCDS5008.1 GJB7 gene_id:375519|Hs108|chr6 ( 223) 394 93.6 1.8e-19
CCDS382.1 GJB5 gene_id:2709|Hs108|chr1 ( 273) 392 93.2 2.7e-19
CCDS58547.1 GJD3 gene_id:125111|Hs108|chr17 ( 294) 387 92.2 6.1e-19
CCDS34697.1 GJC3 gene_id:349149|Hs108|chr7 ( 279) 318 77.3 1.7e-14
CCDS7191.1 GJD4 gene_id:219770|Hs108|chr10 ( 370) 286 70.5 2.5e-12
>>CCDS929.1 GJA5 gene_id:2702|Hs108|chr1 (358 aa)
initn: 2469 init1: 2469 opt: 2469 Z-score: 2871.2 bits: 539.8 E(32554): 1.3e-153
Smith-Waterman score: 2469; 100.0% identity (100.0% similar) in 358 aa overlap (1-358:1-358)
10 20 30 40 50 60
pF1KB9 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAERAKEVRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAERAKEVRGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GSYEYPVAEKAELSCWEEGNGRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIYGIFLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 GSYEYPVAEKAELSCWEEGNGRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIYGIFLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 TLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALSLLLSLAELYHLGWKKIRQRFVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 TLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALSLLLSLAELYHLGWKKIRQRFVK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PRQHMAKCQLSGPSVGIVQSCTPPPDFNQCLENGPGGKFFNPFSNNMASQQNTDNLVTEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 PRQHMAKCQLSGPSVGIVQSCTPPPDFNQCLENGPGGKFFNPFSNNMASQQNTDNLVTEQ
250 260 270 280 290 300
310 320 330 340 350
pF1KB9 VRGQEQTPGEGFIQVRYGQKPEVPNGVSPGHRLPHGYHSDKRRLSKASSKARSDDLSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 VRGQEQTPGEGFIQVRYGQKPEVPNGVSPGHRLPHGYHSDKRRLSKASSKARSDDLSV
310 320 330 340 350
>>CCDS30834.1 GJA8 gene_id:2703|Hs108|chr1 (433 aa)
initn: 1104 init1: 649 opt: 1032 Z-score: 1200.6 bits: 231.0 E(32554): 1.5e-60
Smith-Waterman score: 1032; 61.8% identity (83.8% similar) in 241 aa overlap (1-241:1-239)
10 20 30 40 50 60
pF1KB9 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG
:::::::::.::::..::::.:.::::::::::.:.:::::: :::::.:: :.: :::
CCDS30 MGDWSFLGNILEEVNEHSTVIGRVWLTVLFIFRILILGTAAEFVWGDEQSDFVCNTQQPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAERAKEVRGS
:.:::::.:::::::: :::::::::::::.:.:::.: :::.:::: ::::. . :.
CCDS30 CENVCYDEAFPISHIRLWVLQIIFVSTPSLMYVGHAVHYVRMEEKRKSREAEELGQQAGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GSYEYPVAEKAELSCWEEGNGRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIYGIFLT
.. : ... : .:. .. :.:::: ::.: :...: .:::::::.::.::. .
CCDS30 NGG--PDQGSVKKSSGSKGTKKFRLEGTLLRTYICHIIFKTLFEVGFIVGHYFLYGFRIL
130 140 150 160 170
190 200 210 220 230 240
pF1KB9 TLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALSLLLSLAELYHLGWKKIRQRFVK
:. : : :::. :.:.:::::::..::.:::.::..::.:.. :: ::: : ::. . .
CCDS30 PLYRCSRWPCPNVVDCFVSRPTEKTIFILFMLSVASVSLFLNVMELGHLGLKGIRSALKR
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB9 PRQHMAKCQLSGPSVGIVQSCTPPPDFNQCLENGPGGKFFNPFSNNMASQQNTDNLVTEQ
:
CCDS30 PVEQPLGEIPEKSLHSIAVSSIQKAKGYQLLEEEKIVSHYFPLTEVGMVETSPLPAKPFN
240 250 260 270 280 290
>>CCDS9289.1 GJA3 gene_id:2700|Hs108|chr13 (435 aa)
initn: 1032 init1: 627 opt: 1023 Z-score: 1190.1 bits: 229.0 E(32554): 5.7e-60
Smith-Waterman score: 1023; 61.0% identity (83.5% similar) in 236 aa overlap (1-236:1-232)
10 20 30 40 50 60
pF1KB9 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG
:::::::: .::....::::.::::::::::::.::::.:::. :::::.:: :.: :::
CCDS92 MGDWSFLGRLLENAQEHSTVIGKVWLTVLFIFRILVLGAAAEDVWGDEQSDFTCNTQQPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAERAKEVRGS
:.:::::.::::::::.:.:::::::::.:.:.::..: :::.::.: :: :. . : :
CCDS92 CENVCYDRAFPISHIRFWALQIIFVSTPTLIYLGHVLHIVRMEEKKKEREEEEQLK-RES
70 80 90 100 110
130 140 150 160 170 180
pF1KB9 GSYEYPVAEKAELSCWEEGNGRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIYGIFLT
: . : .. .. ::. . :.:: ::: .:...: .:::::.::::.::. :
CCDS92 PSPKEPPQDNPSS---RDDRGRVRMAGALLRTYVFNIIFKTLFEVGFIAGQYFLYGFELK
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB9 TLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALSLLLSLAELYHLGWKKIRQRFVK
:. : : :::. :.:..::::::..::.:::::: ::::.. :.:::::::..:
CCDS92 PLYRCDRWPCPNTVDCFISRPTEKTIFIIFMLAVACASLLLNMLEIYHLGWKKLKQGVTS
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB9 PRQHMAKCQLSGPSVGIVQSCTPPPDFNQCLENGPGGKFFNPFSNNMASQQNTDNLVTEQ
CCDS92 RLGPDASEAPLGTADPPPLPPSSRPPAVAIGFPPYYAHTAAPLGQARAVGYPGAPPPAAD
240 250 260 270 280 290
>>CCDS30669.1 GJA4 gene_id:2701|Hs108|chr1 (333 aa)
initn: 951 init1: 579 opt: 940 Z-score: 1095.2 bits: 211.1 E(32554): 1.1e-54
Smith-Waterman score: 940; 46.2% identity (72.0% similar) in 329 aa overlap (1-321:1-319)
10 20 30 40 50 60
pF1KB9 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG
::::.:: ..:..:..:::::::.:::::::::.:.:: :.:: :::::.::.:.: :::
CCDS30 MGDWGFLEKLLDQVQEHSTVVGKIWLTVLFIFRILILGLAGESVWGDEQSDFECNTAQPG
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAE-RAKEVRG
: :::::::::::::::::::..:::::.:::.::... : .:. . .:.: :: ..
CCDS30 CTNVCYDQAFPISHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKD
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 SGSYEYPVA----EKAELSCWEEGNGRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIY
. : .: . :..: :. ::. ..:.:..::: :.: ....:.::. ::. .:
CCDS30 P-QVERALAAVERQMAKISVAED--GRLRIRGALMGTYVASVLCKSVLEAGFLYGQWRLY
130 140 150 160 170
180 190 200 210 220 230
pF1KB9 GIFLTTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALSLLLSLAELYHLGWKKIR
: . . ::.:.:::. :.:.:::::::..::.:::.:. .::.:.: :: :: .
CCDS30 GWTMEPVFVCQRAPCPYLVDCFVSRPTEKTIFIIFMLVVGLISLVLNLLELVHL-LCRCL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB9 QRFVKPRQHMAKCQLSGPSVGIVQSCTPPPD---FNQCLENGPGGKFFNPFSNNMASQQN
.: .. :: : . :. : : : : : . .::.. ... .:.::
CCDS30 SRGMRARQG----QDAPPTQGT--SSDPYTDQVFFYLPVGQGPSSPPCPTYNGLSSSEQN
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB9 TDNLVTEQVRGQEQTPGEGFIQVRYGQKPEVPNGVSPGHRLPHGYHSDKRRLSKASSKAR
::.::. .. . : . ::::
CCDS30 WANLTTEERLASSRPPLFLDPPPQNGQKPPSRPSSSASKKQYV
300 310 320 330
>>CCDS5025.1 GJA10 gene_id:84694|Hs108|chr6 (543 aa)
initn: 917 init1: 558 opt: 916 Z-score: 1064.5 bits: 206.1 E(32554): 5.7e-53
Smith-Waterman score: 916; 44.4% identity (69.1% similar) in 324 aa overlap (1-320:1-320)
10 20 30 40 50 60
pF1KB9 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG
::::..::..:::::.:::.:::.:::.::::::::: .:::. : :::. : :.: :::
CCDS50 MGDWNLLGGILEEVHSHSTIVGKIWLTILFIFRMLVLRVAAEDVWDDEQSAFACNTRQPG
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAE--RAKEVR
:.:.:::.::::: ::.:::::::::.:::::::::.. .: :: . :. ::.
CCDS50 CNNICYDDAFPISLIRFWVLQIIFVSSPSLVYMGHALYRLRAFEKDRQRKKSHLRAQMEN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 GSGSYEYPVAEKAELSCWEEGN--GRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIYG
. . : :: :: . .. :.: :: ::: :: :...::::..:::..::
CCDS50 PDLDLEEQQRIDRELRRLEEQKRIHKVPLKGCLLRTYVLHILTRSVLEVGFMIGQYILYG
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 IFLTTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALSLLLSLAELYHLGWKKIRQ
. . :. : . :::. :.:.:::::::..:..:: ..::.::::.. :..::: .:: .
CCDS50 FQMHPLYKCTQPPCPNAVDCFVSRPTEKTIFMLFMHSIAAISLLLNILEIFHLGIRKIMR
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 RFVKPRQHMAKCQLSGPSVGIVQSCTPPPDFNQCLENGPGGKFFNPFSNNMASQQNTDNL
. : . . . .:: . . . .::. . . ..:.. : .: :.
CCDS50 TLYKKSSSEGIEDETGPPFHLKKYSVA----QQCMICSSLPERISPLQANNQQQVIRVNV
250 260 270 280 290
300 310 320 330 340 350
pF1KB9 VTEQVRGQEQTPGEGFIQVRYGQKPEVPNGVSPGHRLPHGYHSDKRRLSKASSKARSDDL
.. : : . .. :.:
CCDS50 PKSKTMWQIPQPRQLEVDPSNGKKDWSEKDQHSGQLHVHSPCPWAGSAGNQHLGQQSDHS
300 310 320 330 340 350
>>CCDS432.1 GJA9 gene_id:81025|Hs108|chr1 (515 aa)
initn: 914 init1: 578 opt: 909 Z-score: 1056.7 bits: 204.6 E(32554): 1.6e-52
Smith-Waterman score: 930; 45.7% identity (70.8% similar) in 315 aa overlap (1-295:1-312)
10 20 30 40 50 60
pF1KB9 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG
::::..::. ::::: :::..::.:::.::::::::::.:::. :.:::. : :.: :::
CCDS43 MGDWNLLGDTLEEVHIHSTMIGKIWLTILFIFRMLVLGVAAEDVWNDEQSGFICNTEQPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAERAKEVRGS
:.::::::::::: :::::::.::::.:::::::::.. .:. :... : . .
CCDS43 CRNVCYDQAFPISLIRYWVLQVIFVSSPSLVYMGHALYRLRVLEEERQRMKAQLRVELEE
70 80 90 100 110 120
130 140 150 160 170
pF1KB9 GSYEYPVAEK---AELSCWEEGN--GRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIY
.:.: .. :: : : .. :.:::: ::: :. :...::::..:::..:
CCDS43 VEFEMPRDRRRLEQEL-CQLEKRKLNKAPLRGTLLCTYVIHIFTRSVVEVGFMIGQYLLY
130 140 150 160 170
180 190 200 210 220 230
pF1KB9 GIFLTTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALSLLLSLAELYHLGWKKIR
:. : : :. :::. ..:.:::::::..:..:: ..:..::.:.. :..:::.:::.
CCDS43 GFHLEPLFKCHGHPCPNIIDCFVSRPTEKTIFLLFMQSIATISLFLNILEIFHLGFKKIK
180 190 200 210 220 230
240 250 260 270 280
pF1KB9 QRFV---------------KPRQHMAKCQLSGPSVGIVQSCTPPPDFNQCLENGPGGKFF
. . : .:..:: : . :.. .. ::.: .:. .
CCDS43 RGLWGKYKLKKEHNEFHANKAKQNVAKYQST--SANSLKRLPSAPDYNLLVEKQTHTAVY
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB9 NPFSNNMASQQNTDNLVTEQVRGQEQTPGEGFIQVRYGQKPEVPNGVSPGHRLPHGYHSD
.... . : : ::
CCDS43 PSLNSSSVFQPNPDNHSVNDEKCILDEQETVLSNEISTLSTSCSHFQHISSNNNKDTHKI
300 310 320 330 340 350
>>CCDS5123.1 GJA1 gene_id:2697|Hs108|chr6 (382 aa)
initn: 938 init1: 538 opt: 883 Z-score: 1028.2 bits: 198.9 E(32554): 6e-51
Smith-Waterman score: 921; 40.6% identity (69.9% similar) in 389 aa overlap (1-358:1-382)
10 20 30 40 50 60
pF1KB9 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG
::::: ::..:..:. .::. :::::.::::::.:.::::.::.:::::. :::.: :::
CCDS51 MGDWSALGKLLDKVQAYSTAGGKVWLSVLFIFRILLLGTAVESAWGDEQSAFRCNTQQPG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAERAKEVRGS
:.:::::..:::::.:.:::::::::.:.:.:..:.....: .:: . .: :. : .. .
CCDS51 CENVCYDKSFPISHVRFWVLQIIFVSVPTLLYLAHVFYVMRKEEKLNKKE-EELKVAQTD
70 80 90 100 110
130 140 150 160 170
pF1KB9 GSYEYPVAEKAELSCWEEG---NGRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIYGI
: .. :.. .. : .:.. ..: :: ::. :::... .::.:.. :..:::.
CCDS51 GVNVDMHLKQIEIKKFKYGIEEHGKVKMRGGLLRTYIISILFKSIFEVAFLLIQWYIYGF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 FLTTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALSLLLSLAELYHLGWKKIRQR
:.....:.:.:::: :.:..::::::..::.:::.:. .:: :.. ::... .: ...:
CCDS51 SLSAVYTCKRDPCPHQVDCFLSRPTEKTIFIIFMLVVSLVSLALNIIELFYVFFKGVKDR
180 190 200 210 220 230
240 250 260 270 280
pF1KB9 FVKPRQ---HMAKCQLS------GPSVGIVQSCTPPPDFNQCLENGPGGKFFNPFSNN--
:: .. : .. :: . . . ..:. : . . . :: :. . ::
CCDS51 -VKGKSDPYHATSGALSPAKDCGSQKYAYFNGCSSPTAPLSPM-SPPGYKLVTGDRNNSS
240 250 260 270 280 290
290 300 310 320 330
pF1KB9 ------MASQQNTDNLVTEQVR-GQEQTPGEGFIQVRYGQKPEVPNG------VSPGHRL
.::.:: : .:: : :: . :. ..: . :. .. ::.:
CCDS51 CRNYNKQASEQNWANYSAEQNRMGQAGST----ISNSHAQPFDFPDDNQNSKKLAAGHEL
300 310 320 330 340 350
340 350
pF1KB9 PHGYHSDKRRLSKASSKA----RSDDLSV
:.: :.:::.: : ::: .
CCDS51 QPLAIVDQRPSSRASSRASSRPRPDDLEI
360 370 380
>>CCDS9290.1 GJB2 gene_id:2706|Hs108|chr13 (226 aa)
initn: 648 init1: 453 opt: 471 Z-score: 552.6 bits: 110.1 E(32554): 1.8e-24
Smith-Waterman score: 680; 45.2% identity (71.0% similar) in 241 aa overlap (3-241:2-225)
10 20 30 40 50 60
pF1KB9 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG
::. : ..: :.:::: .::.:::::::::...: .::. :::::::: :.:.:::
CCDS92 MDWGTLQTILGGVNKHSTSIGKIWLTVLFIFRIMILVVAAKEVWGDEQADFVCNTLQPG
10 20 30 40 50
70 80 90 100 110
pF1KB9 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTV-RMQEKRKLREAERAKEVRG
:.:::::. ::::::: :.::.::::::.:. :::.. : .::.. : ..:
CCDS92 CKNVCYDHYFPISHIRLWALQLIFVSTPALLV---AMHVAYRRHEKKR-------KFIKG
60 70 80 90 100
120 130 140 150 160 170
pF1KB9 SGSYEYPVAEKAELSCWEEGNGRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIY-GIF
. :. :. . . .. ..:.: ::. ::..:. .:..:. : .: :.
CCDS92 EIKSEFKDIEEIKTQ-------KVRIEGSLWWTYTSSIFFRVIFEAAFMYVFYVMYDGFS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB9 LTTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALSLLLSLAELYHLGWKKIRQRF
. : : :::. :.:.:::::::.:: :::.::... .::...:: .: . .
CCDS92 MQRLVKCNAWPCPNTVDCFVSRPTEKTVFTVFMIAVSGICILLNVTELCYLLIRYCSGKS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB9 VKPRQHMAKCQLSGPSVGIVQSCTPPPDFNQCLENGPGGKFFNPFSNNMASQQNTDNLVT
::
CCDS92 KKPV
>>CCDS9291.1 GJB6 gene_id:10804|Hs108|chr13 (261 aa)
initn: 643 init1: 442 opt: 466 Z-score: 546.0 bits: 109.1 E(32554): 4.3e-24
Smith-Waterman score: 661; 40.9% identity (69.1% similar) in 259 aa overlap (3-260:2-239)
10 20 30 40 50 60
pF1KB9 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG
::. : .:. :.:::: .::::.::.::::...: .::. ::::: :: :.:.:::
CCDS92 MDWGTLHTFIGGVNKHSTSIGKVWITVIFIFRVMILVVAAQEVWGDEQEDFVCNTLQPG
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKRKLREAERAKEVRGS
:.:::::. ::.:::: :.::.::::::.:. :. . : . ::.:..:. .. .
CCDS92 CKNVCYDHFFPVSHIRLWALQLIFVSTPALLVAMHVAY-YRHETTRKFRRGEKRNDFK--
60 70 80 90 100 110
130 140 150 160 170
pF1KB9 GSYEYPVAEKAELSCWEEGNGRIALQGTLLNTYVCSILIRTTMEVGFIVGQYFIY-GIFL
. .: .. ..:.: ::. ::..: .:..:. ::.: : :
CCDS92 ---DIEDIKKQ----------KVRIEGSLWWTYTSSIFFRIIFEAAFMYVFYFLYNGYHL
120 130 140 150 160
180 190 200 210 220 230
pF1KB9 TTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAVAALSLLLSLAELYHLGWKKIRQRFV
. : .:::. :.:..::::::.:: .::...... .::..::: .: :. :
CCDS92 PWVLKCGIDPCPNLVDCFISRPTEKTVFTIFMISASVICMLLNVAELCYL-LLKVCFR--
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB9 KPRQHMAKCQLSGPSVGIVQSCTPPPDFNQCLENGPGGKFFNPFSNNMASQQNTDNLVTE
:.. :. : . :. .. .:
CCDS92 --RSKRAQTQKNHPNHALKESKQNEMNELISDSGQNAITGFPS
230 240 250 260
>>CCDS11487.1 GJC1 gene_id:10052|Hs108|chr17 (396 aa)
initn: 759 init1: 436 opt: 449 Z-score: 523.8 bits: 105.6 E(32554): 7.4e-23
Smith-Waterman score: 779; 36.0% identity (64.8% similar) in 386 aa overlap (4-354:3-379)
10 20 30 40 50 60
pF1KB9 MGDWSFLGNFLEEVHKHSTVVGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPG
:::: .:::.:.::: :::.:::::..::... ....:: . :::. : :.: :::
CCDS11 MSWSFLTRLLEEIHNHSTFVGKIWLTVLIVFRIVLTAVGGESIYYDEQSKFVCNTEQPG
10 20 30 40 50
70 80 90 100 110
pF1KB9 CQNVCYDQAFPISHIRYWVLQIIFVSTPSLVYMGHAMHTV-RMQEKRKLREAERAK----
:.::::: :.::.:.::.:::.:.:::..:.:.:.: . .:.. . ..: :.:
CCDS11 CENVCYDAFAPLSHVRFWVFQIILVATPSVMYLGYAIHKIAKMEHGEADKKAARSKPYAM
60 70 80 90 100 110
120 130 140 150
pF1KB9 --------EVRGSGSYEYPVA-------------EKAELSCWEEGNGRIALQGTLLNTYV
: . : :. :... . ..: :: .: :.. ::
CCDS11 RWKQHRALEETEEDNEEDPMMYPEMELESDKENKEQSQPKPKHDGRRRIREDG-LMKIYV
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB9 CSILIRTTMEVGFIVGQYFIYGIFLTTLHVCRRSPCPHPVNCYVSRPTEKNVFIVFMLAV
..: ::..::::..::::.::. . ..:: : :::: ..:..::::::..:...: .:
CCDS11 LQLLARTVFEVGFLIGQYFLYGFQVHPFYVCSRLPCPHKIDCFISRPTEKTIFLLIMYGV
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB9 AALSLLLSLAELYHLGWKKIRQRFVKPRQHMAKCQLSGPSVGIVQSCTP--PPDFNQCLE
..: :::.. :. :::. ::. . . :... . : :: :: .: ..
CCDS11 TGLCLLLNIWEMLHLGFGTIRDSLNSKRREL---EDPGAYNYPFTWNTPSAPPGYNIAVK
240 250 260 270 280 290
280 290 300 310 320
pF1KB9 NGPGGKFFNPFSN-NMASQQNTDNLVTEQVRG--QEQTPGEGFI---QVRYGQ-KPEVPN
: .. .:: ..: .:: : . :: : .:. :.. ..:..: . ..
CCDS11 --PDQIQYTELSNAKIAYKQNKANTAQEQQYGSHEENLPADLEALQREIRMAQERLDLAV
300 310 320 330 340 350
330 340 350
pF1KB9 GVSPGHRLPHGYHSDKRRLSKASSKARSDDLSV
. . ::: ... .:..::: :.
CCDS11 QAYSHQNNPHG---PREKKAKVGSKAGSNKSTASSKSGDGKTSVWI
360 370 380 390
358 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:39:36 2016 done: Fri Nov 4 19:39:36 2016
Total Scan time: 2.770 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]