FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9846, 374 aa
  1>>>pF1KB9846 374 - 374 aa - 374 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2568+/-0.000313; mu= 17.6345+/- 0.019
 mean_var=77.3052+/-15.792, 0's: 0 Z-trim(117.7): 4  B-trim: 994 in 1/52
 Lambda= 0.145871
 statistics sampled from 29918 (29921) to 29918 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.351), width:  16
 Scan time:  9.220

The best scores are:                                      opt bits E(85289)
NP_073562 (OMIM: 189960,603467,613897) Fanconi ane ( 374) 2524 540.3 2.6e-153


>>NP_073562 (OMIM: 189960,603467,613897) Fanconi anemia   (374 aa)
 initn: 2524 init1: 2524 opt: 2524  Z-score: 2873.4  bits: 540.3 E(85289): 2.6e-153
Smith-Waterman score: 2524; 100.0% identity (100.0% similar) in 374 aa overlap (1-374:1-374)

               10        20        30        40        50        60
pF1KB9 MESLLQHLDRFSELLAVSSTTYVSTWDPATVRRALQWARYLRHIHRRFGRHGPIRTALER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MESLLQHLDRFSELLAVSSTTYVSTWDPATVRRALQWARYLRHIHRRFGRHGPIRTALER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RLHNQWRQEGGFGRGPVPGLANFQALGHCDVLLSLRLLENRALGDAARYHLVQQLFPGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 RLHNQWRQEGGFGRGPVPGLANFQALGHCDVLLSLRLLENRALGDAARYHLVQQLFPGPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VRDADEETLQESLARLARRRSAVHMLRFNGYRENPNLQEDSLMKTQAELLLERLQEVGKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 VRDADEETLQESLARLARRRSAVHMLRFNGYRENPNLQEDSLMKTQAELLLERLQEVGKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EAERPARFLSSLWERLPQNNFLKVIAVALLQPPLSRRPQEELEPGIHKSPGEGSQVLVHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 EAERPARFLSSLWERLPQNNFLKVIAVALLQPPLSRRPQEELEPGIHKSPGEGSQVLVHW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LLGNSEVFAAFCRALPAGLLTLVTSRHPALSPVYLGLLTDWGQRLHYDLQKGIWVGTESQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 LLGNSEVFAAFCRALPAGLLTLVTSRHPALSPVYLGLLTDWGQRLHYDLQKGIWVGTESQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 DVPWEELHNRFQSLCQAPPPLKDKVLTALETCKAQDGDFEVPGLSIWTDLLLALRSGAFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 DVPWEELHNRFQSLCQAPPPLKDKVLTALETCKAQDGDFEVPGLSIWTDLLLALRSGAFR
              310       320       330       340       350       360

              370    
pF1KB9 KRQVLGLSAGLSSV
       ::::::::::::::
NP_073 KRQVLGLSAGLSSV
              370    




374 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:42:36 2016 done: Fri Nov  4 19:42:37 2016
 Total Scan time:  9.220 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]