FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9858, 400 aa
  1>>>pF1KB9858 400 - 400 aa - 400 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0742+/-0.000934; mu= -5.0871+/- 0.056
 mean_var=218.5637+/-44.407, 0's: 0 Z-trim(113.2): 19  B-trim: 227 in 1/51
 Lambda= 0.086753
 statistics sampled from 13867 (13880) to 13867 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.426), width:  16
 Scan time:  3.420

The best scores are:                                      opt bits E(32554)
CCDS10650.1 SPN gene_id:6693|Hs108|chr16           ( 400) 2545 331.0 1.2e-90


>>CCDS10650.1 SPN gene_id:6693|Hs108|chr16                (400 aa)
 initn: 2545 init1: 2545 opt: 2545  Z-score: 1740.7  bits: 331.0 E(32554): 1.2e-90
Smith-Waterman score: 2545; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)

               10        20        30        40        50        60
pF1KB9 MATLLLLLGVLVVSPDALGSTTAVQTPTSGEPLVSTSEPLSSKMYTTSITSDPKADSTGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MATLLLLLGVLVVSPDALGSTTAVQTPTSGEPLVSTSEPLSSKMYTTSITSDPKADSTGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QTSALPPSTSINEGSPLWTSIGASTGSPLPEPTTYQEVSIKMSSVPQETPHATSHPAVPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QTSALPPSTSINEGSPLWTSIGASTGSPLPEPTTYQEVSIKMSSVPQETPHATSHPAVPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TANSLGSHTVTGGTITTNSPETSSRTSGAPVTTAASSLETSRGTSGPPLTMATVSLETSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TANSLGSHTVTGGTITTNSPETSSRTSGAPVTTAASSLETSRGTSGPPLTMATVSLETSK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GTSGPPVTMATDSLETSTGTTGPPVTMTTGSLEPSSGASGPQVSSVKLSTMMSPTTSTNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GTSGPPVTMATDSLETSTGTTGPPVTMTTGSLEPSSGASGPQVSSVKLSTMMSPTTSTNA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 STVPFRNPDENSRGMLPVAVLVALLAVIVLVALLLLWRRRQKRRTGALVLSRGGKRNGVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 STVPFRNPDENSRGMLPVAVLVALLAVIVLVALLLLWRRRQKRRTGALVLSRGGKRNGVV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 DAWAGPAQVPEEGAVTVTVGGSGGDKGSGFPDGEGSSRRPTLTTFFGRRKSRQGSLAMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DAWAGPAQVPEEGAVTVTVGGSGGDKGSGFPDGEGSSRRPTLTTFFGRRKSRQGSLAMEE
              310       320       330       340       350       360

              370       380       390       400
pF1KB9 LKSGSGPSLKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP
       ::::::::::::::::::::::::::::::::::::::::
CCDS10 LKSGSGPSLKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP
              370       380       390       400




400 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:50:02 2016 done: Fri Nov  4 19:50:03 2016
 Total Scan time:  3.420 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]