FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9858, 400 aa
  1>>>pF1KB9858 400 - 400 aa - 400 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.6271+/-0.00039; mu= -14.0366+/- 0.024
 mean_var=271.1799+/-54.152, 0's: 0 Z-trim(120.8): 13  B-trim: 11 in 1/53
 Lambda= 0.077884
 statistics sampled from 36550 (36564) to 36550 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.429), width:  16
 Scan time: 10.770

The best scores are:                                      opt bits E(85289)
NP_003114 (OMIM: 182160) leukosialin precursor [Ho ( 400) 2545 299.1 1.3e-80
NP_001025459 (OMIM: 182160) leukosialin precursor  ( 400) 2545 299.1 1.3e-80


>>NP_003114 (OMIM: 182160) leukosialin precursor [Homo s  (400 aa)
 initn: 2545 init1: 2545 opt: 2545  Z-score: 1568.3  bits: 299.1 E(85289): 1.3e-80
Smith-Waterman score: 2545; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)

               10        20        30        40        50        60
pF1KB9 MATLLLLLGVLVVSPDALGSTTAVQTPTSGEPLVSTSEPLSSKMYTTSITSDPKADSTGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MATLLLLLGVLVVSPDALGSTTAVQTPTSGEPLVSTSEPLSSKMYTTSITSDPKADSTGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QTSALPPSTSINEGSPLWTSIGASTGSPLPEPTTYQEVSIKMSSVPQETPHATSHPAVPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QTSALPPSTSINEGSPLWTSIGASTGSPLPEPTTYQEVSIKMSSVPQETPHATSHPAVPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TANSLGSHTVTGGTITTNSPETSSRTSGAPVTTAASSLETSRGTSGPPLTMATVSLETSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TANSLGSHTVTGGTITTNSPETSSRTSGAPVTTAASSLETSRGTSGPPLTMATVSLETSK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GTSGPPVTMATDSLETSTGTTGPPVTMTTGSLEPSSGASGPQVSSVKLSTMMSPTTSTNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GTSGPPVTMATDSLETSTGTTGPPVTMTTGSLEPSSGASGPQVSSVKLSTMMSPTTSTNA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 STVPFRNPDENSRGMLPVAVLVALLAVIVLVALLLLWRRRQKRRTGALVLSRGGKRNGVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 STVPFRNPDENSRGMLPVAVLVALLAVIVLVALLLLWRRRQKRRTGALVLSRGGKRNGVV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 DAWAGPAQVPEEGAVTVTVGGSGGDKGSGFPDGEGSSRRPTLTTFFGRRKSRQGSLAMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DAWAGPAQVPEEGAVTVTVGGSGGDKGSGFPDGEGSSRRPTLTTFFGRRKSRQGSLAMEE
              310       320       330       340       350       360

              370       380       390       400
pF1KB9 LKSGSGPSLKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP
       ::::::::::::::::::::::::::::::::::::::::
NP_003 LKSGSGPSLKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP
              370       380       390       400

>>NP_001025459 (OMIM: 182160) leukosialin precursor [Hom  (400 aa)
 initn: 2545 init1: 2545 opt: 2545  Z-score: 1568.3  bits: 299.1 E(85289): 1.3e-80
Smith-Waterman score: 2545; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:1-400)

               10        20        30        40        50        60
pF1KB9 MATLLLLLGVLVVSPDALGSTTAVQTPTSGEPLVSTSEPLSSKMYTTSITSDPKADSTGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATLLLLLGVLVVSPDALGSTTAVQTPTSGEPLVSTSEPLSSKMYTTSITSDPKADSTGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 QTSALPPSTSINEGSPLWTSIGASTGSPLPEPTTYQEVSIKMSSVPQETPHATSHPAVPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSALPPSTSINEGSPLWTSIGASTGSPLPEPTTYQEVSIKMSSVPQETPHATSHPAVPI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TANSLGSHTVTGGTITTNSPETSSRTSGAPVTTAASSLETSRGTSGPPLTMATVSLETSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TANSLGSHTVTGGTITTNSPETSSRTSGAPVTTAASSLETSRGTSGPPLTMATVSLETSK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 GTSGPPVTMATDSLETSTGTTGPPVTMTTGSLEPSSGASGPQVSSVKLSTMMSPTTSTNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTSGPPVTMATDSLETSTGTTGPPVTMTTGSLEPSSGASGPQVSSVKLSTMMSPTTSTNA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 STVPFRNPDENSRGMLPVAVLVALLAVIVLVALLLLWRRRQKRRTGALVLSRGGKRNGVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STVPFRNPDENSRGMLPVAVLVALLAVIVLVALLLLWRRRQKRRTGALVLSRGGKRNGVV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 DAWAGPAQVPEEGAVTVTVGGSGGDKGSGFPDGEGSSRRPTLTTFFGRRKSRQGSLAMEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DAWAGPAQVPEEGAVTVTVGGSGGDKGSGFPDGEGSSRRPTLTTFFGRRKSRQGSLAMEE
              310       320       330       340       350       360

              370       380       390       400
pF1KB9 LKSGSGPSLKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP
       ::::::::::::::::::::::::::::::::::::::::
NP_001 LKSGSGPSLKGEEEPLVASEDGAVDAPAPDEPEGGDGAAP
              370       380       390       400




400 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:50:03 2016 done: Fri Nov  4 19:50:05 2016
 Total Scan time: 10.770 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]