FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9869, 460 aa
  1>>>pF1KB9869 460 - 460 aa - 460 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3694+/-0.000698; mu= 17.9686+/- 0.042
 mean_var=71.1740+/-14.301, 0's: 0 Z-trim(110.7): 25  B-trim: 141 in 1/49
 Lambda= 0.152024
 statistics sampled from 11772 (11790) to 11772 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.362), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS13435.1 MOCS3 gene_id:27304|Hs108|chr20        ( 460) 3030 673.4 1.3e-193
CCDS12439.1 UBA2 gene_id:10054|Hs108|chr19         ( 640)  284 71.2 3.5e-12


>>CCDS13435.1 MOCS3 gene_id:27304|Hs108|chr20             (460 aa)
 initn: 3030 init1: 3030 opt: 3030  Z-score: 3589.1  bits: 673.4 E(32554): 1.3e-193
Smith-Waterman score: 3030; 100.0% identity (100.0% similar) in 460 aa overlap (1-460:1-460)

               10        20        30        40        50        60
pF1KB9 MASREEVLALQAEVAQREEELNSLKQKLASALLAEQEPQPERLVPVSPLPPKAALSRDEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MASREEVLALQAEVAQREEELNSLKQKLASALLAEQEPQPERLVPVSPLPPKAALSRDEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 LRYSRQLVLPELGVHGQLRLGTACVLIVGCGGLGCPLAQYLAAAGVGRLGLVDYDVVEMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRYSRQLVLPELGVHGQLRLGTACVLIVGCGGLGCPLAQYLAAAGVGRLGLVDYDVVEMS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NLARQVLHGEALAGQAKAFSAAASLRRLNSAVECVPYTQALTPATALDLVRRYDVVADCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NLARQVLHGEALAGQAKAFSAAASLRRLNSAVECVPYTQALTPATALDLVRRYDVVADCS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 DNVPTRYLVNDACVLAGRPLVSASALRFEGQITVYHYDGGPCYRCIFPQPPPAETVTNCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DNVPTRYLVNDACVLAGRPLVSASALRFEGQITVYHYDGGPCYRCIFPQPPPAETVTNCA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 DGGVLGVVTGVLGCLQALEVLKIAAGLGPSYSGSLLLFDALRGHFRSIRLRSRRLDCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DGGVLGVVTGVLGCLQALEVLKIAAGLGPSYSGSLLLFDALRGHFRSIRLRSRRLDCAAC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 GERPTVTDLLDYEAFCGSSATDKCRSLQLLSPEERVSVTDYKRLLDSGAFHLLLDVRPQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GERPTVTDLLDYEAFCGSSATDKCRSLQLLSPEERVSVTDYKRLLDSGAFHLLLDVRPQV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 EVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEKQGTQEGAAVPIYVICKLGNDSQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEKQGTQEGAAVPIYVICKLGNDSQK
              370       380       390       400       410       420

              430       440       450       460
pF1KB9 AVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGTFPQY
       ::::::::::::::::::::::::::::::::::::::::
CCDS13 AVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGTFPQY
              430       440       450       460

>>CCDS12439.1 UBA2 gene_id:10054|Hs108|chr19              (640 aa)
 initn: 276 init1: 167 opt: 284  Z-score: 332.1  bits: 71.2 E(32554): 3.5e-12
Smith-Waterman score: 284; 31.4% identity (61.0% similar) in 159 aa overlap (85-238:20-177)

           60        70        80        90       100       110    
pF1KB9 LSRDEILRYSRQLVLPELGVHGQLRLGTACVLIVGCGGLGCPLAQYLAAAGVGRLGLVDY
                                     ::.:: ::.:: : . :. .: ... :.: 
CCDS12            MALSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDL
                          10        20        30        40         

          120       130       140       150       160        170   
pF1KB9 DVVEMSNLARQVLHGEALAGQAKAFSAAASLRRLNSAVECVPYTQA-LTPATALDLVRRY
       :....::: :: :  .  .:..::  :  :. ..   .. : : .. ..:   ... :..
CCDS12 DTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQF
      50        60        70        80        90       100         

           180       190       200       210       220       230   
pF1KB9 DVVADCSDNVPTRYLVNDACVLAGRPLVSASALRFEGQITVYHYDGGPCYRCIFPQPP--
        .: .  ::  .:  ::  :. :  ::. ...  . ::.:. .     ::.:  :.:   
CCDS12 ILVMNALDNRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYEC-HPKPTQR
     110       120       130       140       150       160         

               240       250       260       270       280         
pF1KB9 --PAETVTNCADGGVLGVVTGVLGCLQALEVLKIAAGLGPSYSGSLLLFDALRGHFRSIR
         :. :. :                                                   
CCDS12 TFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARA
      170       180       190       200       210       220        




460 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:53:35 2016 done: Fri Nov  4 19:53:35 2016
 Total Scan time:  2.930 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]