FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9875, 527 aa
  1>>>pF1KB9875 527 - 527 aa - 527 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7504+/-0.000894; mu= 16.1582+/- 0.054
 mean_var=75.1443+/-14.520, 0's: 0 Z-trim(106.4): 18  B-trim: 0 in 0/51
 Lambda= 0.147954
 statistics sampled from 8968 (8978) to 8968 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.276), width:  16
 Scan time:  3.150

The best scores are:                                      opt bits E(32554)
CCDS7903.1 RAG2 gene_id:5897|Hs108|chr11           ( 527) 3643 787.2       0


>>CCDS7903.1 RAG2 gene_id:5897|Hs108|chr11                (527 aa)
 initn: 3643 init1: 3643 opt: 3643  Z-score: 4202.4  bits: 787.2 E(32554):    0
Smith-Waterman score: 3643; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)

               10        20        30        40        50        60
pF1KB9 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
              430       440       450       460       470       480

              490       500       510       520       
pF1KB9 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
              490       500       510       520       




527 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:57:08 2016 done: Fri Nov  4 19:57:09 2016
 Total Scan time:  3.150 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]