FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9885, 653 aa
  1>>>pF1KB9885 653 - 653 aa - 653 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6699+/-0.00103; mu= 14.3678+/- 0.062
 mean_var=149.2222+/-31.025, 0's: 0 Z-trim(109.1): 112  B-trim: 85 in 1/49
 Lambda= 0.104992
 statistics sampled from 10523 (10646) to 10523 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.327), width:  16
 Scan time:  4.000

The best scores are:                                      opt bits E(32554)
CCDS6817.1 TRIM32 gene_id:22954|Hs108|chr9         ( 653) 4380 675.9 4.8e-194


>>CCDS6817.1 TRIM32 gene_id:22954|Hs108|chr9              (653 aa)
 initn: 4380 init1: 4380 opt: 4380  Z-score: 3597.1  bits: 675.9 E(32554): 4.8e-194
Smith-Waterman score: 4380; 100.0% identity (100.0% similar) in 653 aa overlap (1-653:1-653)

               10        20        30        40        50        60
pF1KB9 MAAAAASHLNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MAAAAASHLNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CPFCSKITRITSLTQLTDNLTVLKIIDTAGLSEAVGLLMCRSCGRRLPRQFCRSCGLVLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 CPFCSKITRITSLTQLTDNLTVLKIIDTAGLSEAVGLLMCRSCGRRLPRQFCRSCGLVLC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EPCREADHQPPGHCTLPVKEAAEERRRDFGEKLTRLRELMGELQRRKAALEGVSKDLQAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EPCREADHQPPGHCTLPVKEAAEERRRDFGEKLTRLRELMGELQRRKAALEGVSKDLQAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 YKAVLQEYGHEERRVQDELARSRKFFTGSLAEVEKSNSQVVEEQSYLLNIAEVQAVSRCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 YKAVLQEYGHEERRVQDELARSRKFFTGSLAEVEKSNSQVVEEQSYLLNIAEVQAVSRCD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YFLAKIKQADVALLEETADEEEPELTASLPRELTLQDVELLKVGHVGPLQIGQAVKKPRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 YFLAKIKQADVALLEETADEEEPELTASLPRELTLQDVELLKVGHVGPLQIGQAVKKPRT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 VNVEDSWAMEATASAASTSVTFREMDMSPEEVVASPRASPAKQRGPEAASNIQQCLFLKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 VNVEDSWAMEATASAASTSVTFREMDMSPEEVVASPRASPAKQRGPEAASNIQQCLFLKK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 MGAKGSTPGMFNLPVSLYVTSQGEVLVADRGNYRIQVFTRKGFLKEIRRSPSGIDSFVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MGAKGSTPGMFNLPVSLYVTSQGEVLVADRGNYRIQVFTRKGFLKEIRRSPSGIDSFVLS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 FLGADLPNLTPLSVAMNCQGLIGVTDSYDNSLKVYTLDGHCVACHRSQLSKPWGITALPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 FLGADLPNLTPLSVAMNCQGLIGVTDSYDNSLKVYTLDGHCVACHRSQLSKPWGITALPS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 GQFVVTDVEGGKLWCFTVDRGSGVVKYSCLCSAVRPKFVTCDAEGTVYFTQGLGLNLENR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 GQFVVTDVEGGKLWCFTVDRGSGVVKYSCLCSAVRPKFVTCDAEGTVYFTQGLGLNLENR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 QNEHHLEGGFSIGSVGPDGQLGRQISHFFSENEDFRCIAGMCVDARGDLIVADSSRKEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QNEHHLEGGFSIGSVGPDGQLGRQISHFFSENEDFRCIAGMCVDARGDLIVADSSRKEIL
              550       560       570       580       590       600

              610       620       630       640       650   
pF1KB9 HFPKGGGYSVLIREGLTCPVGIALTPKGQLLVLDCWDHCIKIYSYHLRRYSTP
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 HFPKGGGYSVLIREGLTCPVGIALTPKGQLLVLDCWDHCIKIYSYHLRRYSTP
              610       620       630       640       650   




653 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:00:21 2016 done: Fri Nov  4 20:00:22 2016
 Total Scan time:  4.000 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]