FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9897, 510 aa
  1>>>pF1KB9897 510 - 510 aa - 510 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3064+/-0.0014; mu= -1.5771+/- 0.080
 mean_var=453.5750+/-102.858, 0's: 0 Z-trim(106.5): 466  B-trim: 0 in 0/53
 Lambda= 0.060221
 statistics sampled from 8471 (9024) to 8471 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.277), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(32554)
CCDS46259.1 EIF2AK2 gene_id:5610|Hs108|chr2        ( 510) 3303 302.7 6.2e-82
CCDS1786.1 EIF2AK2 gene_id:5610|Hs108|chr2         ( 551) 1664 160.4 4.8e-39


>>CCDS46259.1 EIF2AK2 gene_id:5610|Hs108|chr2             (510 aa)
 initn: 3303 init1: 3303 opt: 3303  Z-score: 1584.4  bits: 302.7 E(32554): 6.2e-82
Smith-Waterman score: 3303; 100.0% identity (100.0% similar) in 510 aa overlap (1-510:1-510)

               10        20        30        40        50        60
pF1KB9 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RSLAPRFDLPDMKETKYTVDKRKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RSLAPRFDLPDMKETKYTVDKRKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 VDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQIS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 SQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSK
              430       440       450       460       470       480

              490       500       510
pF1KB9 KPEDRPNTSEILRTLTVWKKSPEKNERHTC
       ::::::::::::::::::::::::::::::
CCDS46 KPEDRPNTSEILRTLTVWKKSPEKNERHTC
              490       500       510

>>CCDS1786.1 EIF2AK2 gene_id:5610|Hs108|chr2              (551 aa)
 initn: 1703 init1: 1664 opt: 1664  Z-score: 814.5  bits: 160.4 E(32554): 4.8e-39
Smith-Waterman score: 3141; 92.4% identity (92.4% similar) in 542 aa overlap (1-501:1-542)

               10        20        30        40        50        60
pF1KB9 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
              190       200       210       220       230       240

              250       260                                        
pF1KB9 RSLAPRFDLPDMKETKYTVDKR--------------------------------------
       ::::::::::::::::::::::                                      
CCDS17 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
              250       260       270       280       290       300

               270       280       290       300       310         
pF1KB9 ---KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
              310       320       330       340       350       360

     320       330       340       350       360       370         
pF1KB9 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
              370       380       390       400       410       420

     380       390       400       410       420       430         
pF1KB9 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
              430       440       450       460       470       480

     440       450       460       470       480       490         
pF1KB9 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
              490       500       510       520       530       540

     500       510
pF1KB9 KSPEKNERHTC
       ::         
CCDS17 KSPEKNERHTC
              550 




510 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:32:24 2016 done: Sun Nov  6 18:32:25 2016
 Total Scan time:  3.460 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]