FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9903, 255 aa
  1>>>pF1KB9903 255 - 255 aa - 255 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6681+/-0.000808; mu= 14.1955+/- 0.049
 mean_var=93.4316+/-18.877, 0's: 0 Z-trim(110.2): 54  B-trim: 559 in 2/48
 Lambda= 0.132687
 statistics sampled from 11349 (11402) to 11349 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.35), width:  16
 Scan time:  1.890

The best scores are:                                      opt bits E(32554)
CCDS10391.1 SNRPA1 gene_id:6627|Hs108|chr15        ( 255) 1633 322.2 2.2e-88


>>CCDS10391.1 SNRPA1 gene_id:6627|Hs108|chr15             (255 aa)
 initn: 1633 init1: 1633 opt: 1633  Z-score: 1700.4  bits: 322.2 E(32554): 2.2e-88
Smith-Waterman score: 1633; 100.0% identity (100.0% similar) in 255 aa overlap (1-255:1-255)

               10        20        30        40        50        60
pF1KB9 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PLLRRLKTLLVNNNRICRIGEGLDQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRGAQLAKDIARRSKT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 FNPGAGLPTDKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FNPGAGLPTDKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIPGRERRSGPTD
              190       200       210       220       230       240

              250     
pF1KB9 DGEEEMEEDTVTNGS
       :::::::::::::::
CCDS10 DGEEEMEEDTVTNGS
              250     




255 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:46:45 2016 done: Sat Nov  5 14:46:46 2016
 Total Scan time:  1.890 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]