FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9923, 342 aa 1>>>pF1KB9923 342 - 342 aa - 342 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.3820+/-0.000754; mu= 3.3387+/- 0.046 mean_var=174.7220+/-35.476, 0's: 0 Z-trim(115.7): 17 B-trim: 460 in 2/49 Lambda= 0.097029 statistics sampled from 16272 (16284) to 16272 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.807), E-opt: 0.2 (0.5), width: 16 Scan time: 3.220 The best scores are: opt bits E(32554) CCDS8089.1 SNX15 gene_id:29907|Hs108|chr11 ( 342) 2297 332.9 2.3e-91 CCDS8090.1 SNX15 gene_id:29907|Hs108|chr11 ( 256) 1504 221.8 4.8e-58 CCDS1513.1 RPS6KC1 gene_id:26750|Hs108|chr1 (1066) 536 86.7 9.5e-17 >>CCDS8089.1 SNX15 gene_id:29907|Hs108|chr11 (342 aa) initn: 2297 init1: 2297 opt: 2297 Z-score: 1753.6 bits: 332.9 E(32554): 2.3e-91 Smith-Waterman score: 2297; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342) 10 20 30 40 50 60 pF1KB9 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 DLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 DLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 EFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 EFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 PAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKEEGAAPSPTHVAELATMEVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 PAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKEEGAAPSPTHVAELATMEVE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 SARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 SARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVH 250 260 270 280 290 300 310 320 330 340 pF1KB9 VLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP :::::::::::::::::::::::::::::::::::::::::: CCDS80 VLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP 310 320 330 340 >>CCDS8090.1 SNX15 gene_id:29907|Hs108|chr11 (256 aa) initn: 1708 init1: 1500 opt: 1504 Z-score: 1155.5 bits: 221.8 E(32554): 4.8e-58 Smith-Waterman score: 1540; 74.6% identity (74.9% similar) in 342 aa overlap (1-342:1-256) 10 20 30 40 50 60 pF1KB9 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 DLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 DLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 EFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS80 EFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 PAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKEEGAAPSPTHVAELATMEVE ::::::::::::::::::::::::::::::::::::::::: CCDS80 PAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKE------------------- 190 200 210 220 250 260 270 280 290 300 pF1KB9 SARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDGVH CCDS80 ------------------------------------------------------------ 310 320 330 340 pF1KB9 VLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP .:::::::::::::::::::::::::::::::::: CCDS80 -------GDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP 230 240 250 >>CCDS1513.1 RPS6KC1 gene_id:26750|Hs108|chr1 (1066 aa) initn: 710 init1: 532 opt: 536 Z-score: 414.2 bits: 86.7 E(32554): 9.5e-17 Smith-Waterman score: 664; 40.7% identity (61.4% similar) in 334 aa overlap (3-336:5-307) 10 20 30 40 50 pF1KB9 MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKL :. . :. : :::..:. ::.::: :::::. .:...::::.:..::::::::.:: CCDS15 MTSYRERSADLARFYTVTEPQRHPRGYTVYKVTARVVSRRNPEDVQEIIVWKRYSDFKKL 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB9 HGDLAYTHRNLFRRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQ : .: :.::::. : :: : .. :::::. .::::::. :::::.:...:::: :: : CCDS15 HKELWQIHKNLFRHSELFPPFAKGIVFGRFDETVIEERRQCAEDLLQFSANIPALYNSKQ 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB9 LKEFFRGGEVTRPLEVSRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPP :..::.:: .. :. . :: : :. : . : : : :: CCDS15 LEDFFKGGIINDSSELIGPAEAHSDSLIDTF----PECSTEGFSSDSDLVSLTVDVD--- 130 140 150 160 170 180 190 200 210 220 230 pF1KB9 SSPAQEALDLLFNCESTEEASGSPARGPLTEAELALFDPFSKEEGAAPSPTHVAELATME : :. :: .. .: .:. : : . :. ::. : .. .. : CCDS15 -SLAE--LD---------DGMASNQNSPIRTFGLNLSSD-SSALGAVASDSEQSKTEE-E 180 190 200 210 240 250 260 270 280 290 pF1KB9 VESARLDQEPWEPGGQEEEEDGEGGPTPAYLSQATELITQALRDEKAGAYAAALQGYRDG :: : ::. . . . :: .: ::: ::. :. : :: . :: : CCDS15 RESRSL-----FPGSLKPKLGKRD-----YLEKAGELIKLALKKEEEDDYEAASDFYRKG 220 230 240 250 260 300 310 320 330 340 pF1KB9 VHVLLQGVPSDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP : .::.:: .. :.:.:.::...:::: ::: : :. CCDS15 VDLLLEGVQGESSPTRREAVKRRTAEYLMRAESISSLYGKPQLDDVSQPPGSLSSRPLWN 270 280 290 300 310 320 CCDS15 LRSPAEELKAFRVLGVIDKVLLVMDTRTEQTFILKGLRKSSEYSRNRKTIIPRCVPNMVC 330 340 350 360 370 380 342 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 14:50:06 2016 done: Sat Nov 5 14:50:06 2016 Total Scan time: 3.220 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]