FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9925, 346 aa
  1>>>pF1KB9925 346 - 346 aa - 346 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6035+/-0.00113; mu= 5.0010+/- 0.068
 mean_var=117.5765+/-23.524, 0's: 0 Z-trim(104.4): 44  B-trim: 32 in 2/48
 Lambda= 0.118281
 statistics sampled from 7887 (7898) to 7887 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.607), E-opt: 0.2 (0.243), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS7487.2 ERLIN1 gene_id:10613|Hs108|chr10        ( 348) 2180 383.3 1.6e-106
CCDS6095.1 ERLIN2 gene_id:11160|Hs108|chr8         ( 339) 1588 282.3   4e-76
CCDS34879.1 ERLIN2 gene_id:11160|Hs108|chr8        ( 152)  733 136.3 1.6e-32


>>CCDS7487.2 ERLIN1 gene_id:10613|Hs108|chr10             (348 aa)
 initn: 2180 init1: 2180 opt: 2180  Z-score: 2025.9  bits: 383.3 E(32554): 1.6e-106
Smith-Waterman score: 2180; 100.0% identity (100.0% similar) in 346 aa overlap (1-346:3-348)

                 10        20        30        40        50        
pF1KB9   MTQARVLVAAVVGLVAVLLYASIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITT
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MNMTQARVLVAAVVGLVAVLLYASIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITT
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB9 FRSVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 FRSVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFN
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KB9 KIHHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KIHHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEA
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KB9 IRRNFELMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IRRNFELMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKET
              190       200       210       220       230       240

      240       250       260       270       280       290        
pF1KB9 EKRISEIEDAAFLAREKAKADAEYYAAHKYATSNKHKLTPEYLELKKYQAIASNSKIYFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EKRISEIEDAAFLAREKAKADAEYYAAHKYATSNKHKLTPEYLELKKYQAIASNSKIYFG
              250       260       270       280       290       300

      300       310       320       330       340      
pF1KB9 SNIPNMFVDSSCALKYSDIRTGRESSLPSKEALEPSGENVIQNKESTG
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SNIPNMFVDSSCALKYSDIRTGRESSLPSKEALEPSGENVIQNKESTG
              310       320       330       340        

>>CCDS6095.1 ERLIN2 gene_id:11160|Hs108|chr8              (339 aa)
 initn: 1607 init1: 1578 opt: 1588  Z-score: 1480.1  bits: 282.3 E(32554): 4e-76
Smith-Waterman score: 1588; 79.6% identity (94.2% similar) in 309 aa overlap (1-309:1-309)

               10        20        30        40        50        60
pF1KB9 MTQARVLVAAVVGLVAVLLYASIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFR
       :.:  ..::.. ..  . :....:::::::..::::::::::: ::::.:.::::::...
CCDS60 MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKI
       :::::::::::::::::::::::::.:::::::.:.: ::.:::.::::::::.::::::
CCDS60 SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 HHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIR
       :::::::::.::::::::::::::::::: :::.::. :::::.:::::::::.::::::
CCDS60 HHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 RNFELMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEK
       ::.::::.::::::::::::::::::::::::::.:::::.::::.: . ::::::::::
CCDS60 RNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RISEIEDAAFLAREKAKADAEYYAAHKYATSNKHKLTPEYLELKKYQAIASNSKIYFGSN
       .:::::::::::::::::::: :.: : : .:: :::::::.: ::.:::::::::::..
CCDS60 KISEIEDAAFLAREKAKADAECYTAMKIAEANKLKLTPEYLQLMKYKAIASNSKIYFGKD
              250       260       270       280       290       300

              310       320       330       340      
pF1KB9 IPNMFVDSSCALKYSDIRTGRESSLPSKEALEPSGENVIQNKESTG
       :::::.::.                                     
CCDS60 IPNMFMDSAGSVSKQFEGLADKLSFGLEDEPLETATKEN       
              310       320       330                

>>CCDS34879.1 ERLIN2 gene_id:11160|Hs108|chr8             (152 aa)
 initn: 723 init1: 723 opt: 733  Z-score: 697.2  bits: 136.3 E(32554): 1.6e-32
Smith-Waterman score: 733; 72.0% identity (93.3% similar) in 150 aa overlap (1-150:1-149)

               10        20        30        40        50        60
pF1KB9 MTQARVLVAAVVGLVAVLLYASIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFR
       :.:  ..::.. ..  . :....:::::::..::::::::::: ::::.:.::::::...
CCDS34 MAQLGAVVAVASSFFCASLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SVQTTLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKI
       :::::::::::::::::::::::::.:::::::.:.: ::.:::.::::::::.::::::
CCDS34 SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 HHELNQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIR
       :::::::::.:::::::::::  ......:                              
CCDS34 HHELNQFCSVHTLQEVYIELFG-LENDFSQESS                           
              130       140        150                             




346 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:31:59 2016 done: Fri Nov  4 09:31:59 2016
 Total Scan time:  1.790 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]