FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9936, 634 aa
  1>>>pF1KB9936 634 - 634 aa - 634 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.6784+/-0.00129; mu= -25.0997+/- 0.078
 mean_var=775.4036+/-159.546, 0's: 0 Z-trim(116.7): 15  B-trim: 55 in 1/54
 Lambda= 0.046059
 statistics sampled from 17286 (17297) to 17286 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.794), E-opt: 0.2 (0.531), width:  16
 Scan time:  4.410

The best scores are:                                      opt bits E(32554)
CCDS32963.1 CRTC1 gene_id:23373|Hs108|chr19        ( 634) 4272 299.2 1.1e-80
CCDS42525.1 CRTC1 gene_id:23373|Hs108|chr19        ( 650) 3765 265.5 1.6e-70


>>CCDS32963.1 CRTC1 gene_id:23373|Hs108|chr19             (634 aa)
 initn: 4272 init1: 4272 opt: 4272  Z-score: 1561.8  bits: 299.2 E(32554): 1.1e-80
Smith-Waterman score: 4272; 100.0% identity (100.0% similar) in 634 aa overlap (1-634:1-634)

               10        20        30        40        50        60
pF1KB9 MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 YGGSLPNVNQIGSGTMDLPFQTPFQSSGLDTSRTTRHHGLVDRVYRERGRLGSPHRRPLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YGGSLPNVNQIGSGTMDLPFQTPFQSSGLDTSRTTRHHGLVDRVYRERGRLGSPHRRPLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VDKHGRQADSCPYGTMYLSPPADTSWRRTNSDSALHQSTMTPTQPESFSSGSQDVHQKRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VDKHGRQADSCPYGTMYLSPPADTSWRRTNSDSALHQSTMTPTQPESFSSGSQDVHQKRV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 LLLTVPGMEETTSEADKNLSKQAWDTKKTGSRPKSCEVPGINIFPSADQENTTALIPATH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLLTVPGMEETTSEADKNLSKQAWDTKKTGSRPKSCEVPGINIFPSADQENTTALIPATH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 NTGGSLPDLTNIHFPSPLPTPLDPEEPTFPALSSSSSTGNLAANLTHLGIGGAGQGMSTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NTGGSLPDLTNIHFPSPLPTPLDPEEPTFPALSSSSSTGNLAANLTHLGIGGAGQGMSTP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 GSSPQHRPAGVSPLSLSTEARRQQASPTLSPLSPITQAVAMDALSLEQQLPYAFFTQAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GSSPQHRPAGVSPLSLSTEARRQQASPTLSPLSPITQAVAMDALSLEQQLPYAFFTQAGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 QQPPPQPQPPPPPPPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVTVPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QQPPPQPQPPPPPPPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPPLAVTVPSS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 LPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSPQHTSTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSPVSNQGFSPGSSPQHTSTL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 GSVFGDAYYEQQMAARQANALSHQLEQFNMMENAISSSSLYSPGSTLNYSQAAMMGLTGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GSVFGDAYYEQQMAARQANALSHQLEQFNMMENAISSSSLYSPGSTLNYSQAAMMGLTGS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 HGSLPDSQQLGYASHSGIPNIILTVTGESPPSLSKELTSSLAGVGDVSFDSDSQFPLDEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HGSLPDSQQLGYASHSGIPNIILTVTGESPPSLSKELTSSLAGVGDVSFDSDSQFPLDEL
              550       560       570       580       590       600

              610       620       630    
pF1KB9 KIDPLTLDGLHMLNDPDMVLADPATEDTFRMDRL
       ::::::::::::::::::::::::::::::::::
CCDS32 KIDPLTLDGLHMLNDPDMVLADPATEDTFRMDRL
              610       620       630    

>>CCDS42525.1 CRTC1 gene_id:23373|Hs108|chr19             (650 aa)
 initn: 4258 init1: 3748 opt: 3765  Z-score: 1379.6  bits: 265.5 E(32554): 1.6e-70
Smith-Waterman score: 4230; 97.5% identity (97.5% similar) in 650 aa overlap (1-634:1-650)

               10        20        30        40        50        60
pF1KB9 MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MATSNNPRKFSEKIALHNQKQAEETAAFEEVMKDLSLTRAARLQLQKSQYLQLGPSRGQY
               10        20        30        40        50        60

               70        80                        90       100    
pF1KB9 YGGSLPNVNQIGSGTMDLPFQ----------------TPFQSSGLDTSRTTRHHGLVDRV
       :::::::::::::::::::::                :::::::::::::::::::::::
CCDS42 YGGSLPNVNQIGSGTMDLPFQPSGFLGEALAAAPVSLTPFQSSGLDTSRTTRHHGLVDRV
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KB9 YRERGRLGSPHRRPLSVDKHGRQADSCPYGTMYLSPPADTSWRRTNSDSALHQSTMTPTQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YRERGRLGSPHRRPLSVDKHGRQADSCPYGTMYLSPPADTSWRRTNSDSALHQSTMTPTQ
              130       140       150       160       170       180

          170       180       190       200       210       220    
pF1KB9 PESFSSGSQDVHQKRVLLLTVPGMEETTSEADKNLSKQAWDTKKTGSRPKSCEVPGINIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PESFSSGSQDVHQKRVLLLTVPGMEETTSEADKNLSKQAWDTKKTGSRPKSCEVPGINIF
              190       200       210       220       230       240

          230       240       250       260       270       280    
pF1KB9 PSADQENTTALIPATHNTGGSLPDLTNIHFPSPLPTPLDPEEPTFPALSSSSSTGNLAAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PSADQENTTALIPATHNTGGSLPDLTNIHFPSPLPTPLDPEEPTFPALSSSSSTGNLAAN
              250       260       270       280       290       300

          290       300       310       320       330       340    
pF1KB9 LTHLGIGGAGQGMSTPGSSPQHRPAGVSPLSLSTEARRQQASPTLSPLSPITQAVAMDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LTHLGIGGAGQGMSTPGSSPQHRPAGVSPLSLSTEARRQQASPTLSPLSPITQAVAMDAL
              310       320       330       340       350       360

          350       360       370       380       390       400    
pF1KB9 SLEQQLPYAFFTQAGSQQPPPQPQPPPPPPPASQQPPPPPPPQAPVRLPPGGPLLPSASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SLEQQLPYAFFTQAGSQQPPPQPQPPPPPPPASQQPPPPPPPQAPVRLPPGGPLLPSASL
              370       380       390       400       410       420

          410       420       430       440       450       460    
pF1KB9 TRGPQPPPLAVTVPSSLPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSPVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TRGPQPPPLAVTVPSSLPQSPPENPGQPSMGIDIASAPALQQYRTSAGSPANQSPTSPVS
              430       440       450       460       470       480

          470       480       490       500       510       520    
pF1KB9 NQGFSPGSSPQHTSTLGSVFGDAYYEQQMAARQANALSHQLEQFNMMENAISSSSLYSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NQGFSPGSSPQHTSTLGSVFGDAYYEQQMAARQANALSHQLEQFNMMENAISSSSLYSPG
              490       500       510       520       530       540

          530       540       550       560       570       580    
pF1KB9 STLNYSQAAMMGLTGSHGSLPDSQQLGYASHSGIPNIILTVTGESPPSLSKELTSSLAGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 STLNYSQAAMMGLTGSHGSLPDSQQLGYASHSGIPNIILTVTGESPPSLSKELTSSLAGV
              550       560       570       580       590       600

          590       600       610       620       630    
pF1KB9 GDVSFDSDSQFPLDELKIDPLTLDGLHMLNDPDMVLADPATEDTFRMDRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GDVSFDSDSQFPLDELKIDPLTLDGLHMLNDPDMVLADPATEDTFRMDRL
              610       620       630       640       650




634 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:56:17 2016 done: Sat Nov  5 14:56:17 2016
 Total Scan time:  4.410 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]