Result of FASTA (omim) for
pF1KB9951
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9951, 535 aa
1>>>pF1KB9951 535 - 535 aa - 535 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8158+/-0.000382; mu= 8.9589+/- 0.024
mean_var=288.7079+/-65.104, 0's: 0 Z-trim(119.7): 235 B-trim: 0 in 0/61
Lambda= 0.075482
statistics sampled from 33600 (33936) to 33600 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.398), width: 16
Scan time: 11.850
The best scores are: opt bits E(85289)
NP_001308286 (OMIM: 606010) nuclear receptor-bindi ( 535) 3502 395.3 2.4e-109
NP_037524 (OMIM: 606010) nuclear receptor-binding ( 535) 3502 395.3 2.4e-109
NP_001308291 (OMIM: 606010) nuclear receptor-bindi ( 534) 3484 393.4 9.4e-109
NP_001308288 (OMIM: 606010) nuclear receptor-bindi ( 543) 3476 392.5 1.7e-108
NP_001308287 (OMIM: 606010) nuclear receptor-bindi ( 543) 3476 392.5 1.7e-108
NP_001308290 (OMIM: 606010) nuclear receptor-bindi ( 542) 3458 390.5 6.7e-108
NP_001308292 (OMIM: 606010) nuclear receptor-bindi ( 503) 2574 294.2 6.1e-79
NP_848659 (OMIM: 615563) nuclear receptor-binding ( 501) 1958 227.1 9.6e-59
XP_016868872 (OMIM: 615563) PREDICTED: nuclear rec ( 557) 1872 217.8 6.7e-56
XP_016868868 (OMIM: 615563) PREDICTED: nuclear rec ( 612) 1872 217.9 7.1e-56
XP_016868871 (OMIM: 615563) PREDICTED: nuclear rec ( 574) 1869 217.5 8.6e-56
XP_016868869 (OMIM: 615563) PREDICTED: nuclear rec ( 606) 1869 217.6 8.8e-56
XP_016868867 (OMIM: 615563) PREDICTED: nuclear rec ( 661) 1869 217.6 9.3e-56
XP_016868870 (OMIM: 615563) PREDICTED: nuclear rec ( 593) 1783 208.2 5.8e-53
XP_016875328 (OMIM: 201300,605232,614492) PREDICTE (2043) 502 69.4 1.2e-10
XP_011519311 (OMIM: 201300,605232,614492) PREDICTE (2107) 502 69.4 1.2e-10
XP_011519310 (OMIM: 201300,605232,614492) PREDICTE (2108) 502 69.4 1.2e-10
NP_055638 (OMIM: 201300,605232,614492) serine/thre (2134) 502 69.5 1.2e-10
XP_016875327 (OMIM: 201300,605232,614492) PREDICTE (2135) 502 69.5 1.2e-10
XP_016875326 (OMIM: 201300,605232,614492) PREDICTE (2136) 502 69.5 1.2e-10
XP_016875325 (OMIM: 201300,605232,614492) PREDICTE (2200) 502 69.5 1.2e-10
XP_016875324 (OMIM: 201300,605232,614492) PREDICTE (2201) 502 69.5 1.2e-10
XP_016875323 (OMIM: 201300,605232,614492) PREDICTE (2228) 502 69.5 1.2e-10
XP_011519309 (OMIM: 201300,605232,614492) PREDICTE (2353) 502 69.5 1.3e-10
XP_011519308 (OMIM: 201300,605232,614492) PREDICTE (2354) 502 69.5 1.3e-10
XP_006719066 (OMIM: 201300,605232,614492) PREDICTE (2381) 502 69.5 1.3e-10
NP_061852 (OMIM: 201300,605232,614492) serine/thre (2382) 502 69.5 1.3e-10
XP_011519306 (OMIM: 201300,605232,614492) PREDICTE (2548) 502 69.6 1.3e-10
XP_011519305 (OMIM: 201300,605232,614492) PREDICTE (2549) 502 69.6 1.3e-10
NP_998820 (OMIM: 201300,605232,614492) serine/thre (2634) 502 69.6 1.4e-10
XP_011519304 (OMIM: 201300,605232,614492) PREDICTE (2641) 502 69.6 1.4e-10
NP_001171914 (OMIM: 201300,605232,614492) serine/t (2642) 502 69.6 1.4e-10
XP_011519303 (OMIM: 201300,605232,614492) PREDICTE (2702) 502 69.6 1.4e-10
XP_011519302 (OMIM: 201300,605232,614492) PREDICTE (2730) 502 69.6 1.4e-10
XP_011519300 (OMIM: 201300,605232,614492) PREDICTE (2794) 502 69.6 1.4e-10
XP_011519301 (OMIM: 201300,605232,614492) PREDICTE (2794) 502 69.6 1.4e-10
XP_011519299 (OMIM: 201300,605232,614492) PREDICTE (2795) 502 69.6 1.4e-10
XP_006724656 (OMIM: 300358) PREDICTED: serine/thre (1743) 493 68.4 2.1e-10
NP_001002838 (OMIM: 300358) serine/threonine-prote (1743) 493 68.4 2.1e-10
XP_011529104 (OMIM: 300358) PREDICTED: serine/thre (1753) 493 68.4 2.1e-10
XP_016885234 (OMIM: 300358) PREDICTED: serine/thre (1790) 493 68.4 2.1e-10
XP_016885233 (OMIM: 300358) PREDICTED: serine/thre (1800) 493 68.4 2.2e-10
NP_065973 (OMIM: 300358) serine/threonine-protein (1800) 493 68.4 2.2e-10
XP_016885232 (OMIM: 300358) PREDICTED: serine/thre (1800) 493 68.4 2.2e-10
XP_016885231 (OMIM: 300358) PREDICTED: serine/thre (1800) 493 68.4 2.2e-10
XP_016885230 (OMIM: 300358) PREDICTED: serine/thre (1800) 493 68.4 2.2e-10
XP_016870544 (OMIM: 606249) PREDICTED: serine/thre (2162) 483 67.4 5.1e-10
XP_016870543 (OMIM: 606249) PREDICTED: serine/thre (2163) 483 67.4 5.1e-10
XP_005252201 (OMIM: 606249) PREDICTED: serine/thre (2185) 483 67.4 5.1e-10
XP_011517238 (OMIM: 606249) PREDICTED: serine/thre (2190) 483 67.4 5.1e-10
>>NP_001308286 (OMIM: 606010) nuclear receptor-binding p (535 aa)
initn: 3502 init1: 3502 opt: 3502 Z-score: 2084.1 bits: 395.3 E(85289): 2.4e-109
Smith-Waterman score: 3502; 100.0% identity (100.0% similar) in 535 aa overlap (1-535:1-535)
10 20 30 40 50 60
pF1KB9 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDTINNHVKTCREEQKNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDTINNHVKTCREEQKNL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 HFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAIQLLEDPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAIQLLEDPLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 REFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENALEEITKNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENALEEITKNM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 DTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRPQQPQQEEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRPQQPQQEEV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 TSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCDL
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 MPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVTVSS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVTVSS
490 500 510 520 530
>>NP_037524 (OMIM: 606010) nuclear receptor-binding prot (535 aa)
initn: 3502 init1: 3502 opt: 3502 Z-score: 2084.1 bits: 395.3 E(85289): 2.4e-109
Smith-Waterman score: 3502; 100.0% identity (100.0% similar) in 535 aa overlap (1-535:1-535)
10 20 30 40 50 60
pF1KB9 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDTINNHVKTCREEQKNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDTINNHVKTCREEQKNL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 HFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAIQLLEDPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 HFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAIQLLEDPLQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 REFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENALEEITKNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 REFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENALEEITKNM
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 DTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRPQQPQQEEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 DTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRPQQPQQEEV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 TSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 TSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCDL
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 MPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVTVSS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 MPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVTVSS
490 500 510 520 530
>>NP_001308291 (OMIM: 606010) nuclear receptor-binding p (534 aa)
initn: 3482 init1: 1846 opt: 3484 Z-score: 2073.5 bits: 393.4 E(85289): 9.4e-109
Smith-Waterman score: 3484; 99.8% identity (99.8% similar) in 535 aa overlap (1-535:1-534)
10 20 30 40 50 60
pF1KB9 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDTINNHVKTCREEQKNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDTINNHVKTCREEQKNL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 HFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAIQLLEDPLQ
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HFFAPEYG-VTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAIQLLEDPLQ
250 260 270 280 290
310 320 330 340 350 360
pF1KB9 REFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENALEEITKNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENALEEITKNM
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB9 DTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRPQQPQQEEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRPQQPQQEEV
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB9 TSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCDL
420 430 440 450 460 470
490 500 510 520 530
pF1KB9 MPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVTVSS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVTVSS
480 490 500 510 520 530
>>NP_001308288 (OMIM: 606010) nuclear receptor-binding p (543 aa)
initn: 2051 init1: 2051 opt: 3476 Z-score: 2068.7 bits: 392.5 E(85289): 1.7e-108
Smith-Waterman score: 3476; 98.5% identity (98.5% similar) in 543 aa overlap (1-535:1-543)
10 20 30 40 50 60
pF1KB9 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
130 140 150 160 170 180
190 200 210 220 230
pF1KB9 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSV--------APDTINNHVKT
::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVFHRIFANVAPDTINNHVKT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 CREEQKNLHFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CREEQKNLHFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAI
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 QLLEDPLQREFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLLEDPLQREFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENA
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB9 LEEITKNMDTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEEITKNMDTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB9 QQPQQEEVTSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQPQQEEVTSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKL
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB9 NRHLSCDLMPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRHLSCDLMPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVT
490 500 510 520 530 540
pF1KB9 VSS
:::
NP_001 VSS
>>NP_001308287 (OMIM: 606010) nuclear receptor-binding p (543 aa)
initn: 2051 init1: 2051 opt: 3476 Z-score: 2068.7 bits: 392.5 E(85289): 1.7e-108
Smith-Waterman score: 3476; 98.5% identity (98.5% similar) in 543 aa overlap (1-535:1-543)
10 20 30 40 50 60
pF1KB9 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
130 140 150 160 170 180
190 200 210 220 230
pF1KB9 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSV--------APDTINNHVKT
::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVFHRIFANVAPDTINNHVKT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 CREEQKNLHFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CREEQKNLHFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAI
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 QLLEDPLQREFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLLEDPLQREFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENA
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB9 LEEITKNMDTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEEITKNMDTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB9 QQPQQEEVTSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQPQQEEVTSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKL
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB9 NRHLSCDLMPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRHLSCDLMPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVT
490 500 510 520 530 540
pF1KB9 VSS
:::
NP_001 VSS
>>NP_001308290 (OMIM: 606010) nuclear receptor-binding p (542 aa)
initn: 2959 init1: 1516 opt: 3458 Z-score: 2058.1 bits: 390.5 E(85289): 6.7e-108
Smith-Waterman score: 3458; 98.3% identity (98.3% similar) in 543 aa overlap (1-535:1-542)
10 20 30 40 50 60
pF1KB9 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
130 140 150 160 170 180
190 200 210 220 230
pF1KB9 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSV--------APDTINNHVKT
::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVFHRIFANVAPDTINNHVKT
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 CREEQKNLHFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CREEQKNLHFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAI
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 QLLEDPLQREFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENA
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLLEDPLQR-FIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENA
310 320 330 340 350
360 370 380 390 400 410
pF1KB9 LEEITKNMDTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEEITKNMDTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRP
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB9 QQPQQEEVTSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQPQQEEVTSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKL
420 430 440 450 460 470
480 490 500 510 520 530
pF1KB9 NRHLSCDLMPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRHLSCDLMPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVT
480 490 500 510 520 530
pF1KB9 VSS
:::
NP_001 VSS
540
>>NP_001308292 (OMIM: 606010) nuclear receptor-binding p (503 aa)
initn: 2570 init1: 2570 opt: 2574 Z-score: 1538.2 bits: 294.2 E(85289): 6.1e-79
Smith-Waterman score: 3215; 94.0% identity (94.0% similar) in 535 aa overlap (1-535:1-503)
10 20 30 40 50 60
pF1KB9 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEGESQTVLSSGSDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CGRWQKRREEVNQRNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKV------
70 80 90 100 110
130 140 150 160 170 180
pF1KB9 LIQLEHLNIVKFHKYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
::::::::::::::::::::::::::::::::::
NP_001 --------------------------IFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW
120 130 140
190 200 210 220 230 240
pF1KB9 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDTINNHVKTCREEQKNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDTINNHVKTCREEQKNL
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB9 HFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAIQLLEDPLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HFFAPEYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAIQLLEDPLQ
210 220 230 240 250 260
310 320 330 340 350 360
pF1KB9 REFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENALEEITKNM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REFIQKCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENALEEITKNM
270 280 290 300 310 320
370 380 390 400 410 420
pF1KB9 DTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRPQQPQQEEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTSAVLAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAFGLPRPQQPQQEEV
330 340 350 360 370 380
430 440 450 460 470 480
pF1KB9 TSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCDL
390 400 410 420 430 440
490 500 510 520 530
pF1KB9 MPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVTVSS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVTVSS
450 460 470 480 490 500
>>NP_848659 (OMIM: 615563) nuclear receptor-binding prot (501 aa)
initn: 1852 init1: 948 opt: 1958 Z-score: 1175.7 bits: 227.1 E(85289): 9.6e-59
Smith-Waterman score: 1964; 62.4% identity (80.4% similar) in 489 aa overlap (44-518:17-496)
20 30 40 50 60 70
pF1KB9 SDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESPCGRWQKRREEVNQ
:.:.::::::.:::::::::::::::.:::
NP_848 MAAPEPAPRRAREREREREDESEDESDILEESPCGRWQKRREQVNQ
10 20 30 40
80 90 100 110 120 130
pF1KB9 RNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFH
:.::..:..:::::::::::::::..:..:: . .:::...::..:. ..: ::::.:
NP_848 GNMPGLQSTFLAMDTEEGVEVVWNELHFGDRKAFAAHEEKIQTVFEQLVLVDHPNIVKLH
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB9 KYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHS
::: : .: :::::::::.:::::::::::::::::.:: .::::::::::::::.::.
NP_848 KYWLDTSEACARVIFITEYVSSGSLKQFLKKTKKNHKAMNARAWKRWCTQILSALSFLHA
110 120 130 140 150 160
200 210 220 230 240
pF1KB9 CDPPIIHGNLTCDTIFIQHNGLIKIGSV--------APDTINNHVKTCREEQKNLHFFAP
:.::::::::: :::::::::::::::: :: . . ... ::: .::::: :
NP_848 CSPPIIHGNLTSDTIFIQHNGLIKIGSVWHRIFSNALPDDLRSPIRAEREELRNLHFFPP
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 EYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAIQLLEDPLQREFIQ
:::::.. :::::.::::::::::::::: ::.. : .:::. : . : :: .::::
NP_848 EYGEVAD-GTAVDIFSFGMCALEMAVLEIQTNGDTR-VTEEAIARARHSLSDPNMREFIL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 KCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENALEEITKNMDTSAV
:: .:::::.:. :::: .:::: :::::::::.. ::...:::..:: :: :: ::
NP_848 CCLARDPARRPSAHSLLFHRVLFEVHSLKLLAAHCFIQHQYLMPENVVEEKTKAMDLHAV
290 300 310 320 330 340
370 380 390 400 410
pF1KB9 LAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAF------GLPRPQQPQQEE
:::.: : : :.: ::. .:::::::::::::::: : :::: : ::
NP_848 LAELPR-PRRPPLQWRYSEVSFMELDKFLEDVRNGIYPLMNFAATRPLGLPRVLAPPPEE
350 360 370 380 390 400
420 430 440 450 460 470
pF1KB9 VTSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCD
: . .::::::: . :::::. ::::.: :. .. :::::: :::.:.:.:. :
NP_848 VQK------AKTPTPEPFDSETRKVIQMQCNLERSEDKARWHLTLLLVLEDRLHRQLTYD
410 420 430 440 450
480 490 500 510 520 530
pF1KB9 LMPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVTVSS
:.:... .::.:::. ::. : :. .:...:: :. :.
NP_848 LLPTDSAQDLASELVHYGFLHEDDRMKLAAFLESTFLKYRGTQA
460 470 480 490 500
>>XP_016868872 (OMIM: 615563) PREDICTED: nuclear recepto (557 aa)
initn: 1762 init1: 948 opt: 1872 Z-score: 1124.6 bits: 217.8 E(85289): 6.7e-56
Smith-Waterman score: 1878; 63.4% identity (80.2% similar) in 464 aa overlap (44-493:17-469)
20 30 40 50 60 70
pF1KB9 SDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESPCGRWQKRREEVNQ
:.:.::::::.:::::::::::::::.:::
XP_016 MAAPEPAPRRAREREREREDESEDESDILEESPCGRWQKRREQVNQ
10 20 30 40
80 90 100 110 120 130
pF1KB9 RNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFH
:.::..:..:::::::::::::::..:..:: . .:::...::..:. ..: ::::.:
XP_016 GNMPGLQSTFLAMDTEEGVEVVWNELHFGDRKAFAAHEEKIQTVFEQLVLVDHPNIVKLH
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB9 KYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHS
::: : .: :::::::::.:::::::::::::::::.:: .::::::::::::::.::.
XP_016 KYWLDTSEACARVIFITEYVSSGSLKQFLKKTKKNHKAMNARAWKRWCTQILSALSFLHA
110 120 130 140 150 160
200 210 220 230 240
pF1KB9 CDPPIIHGNLTCDTIFIQHNGLIKIGSV--------APDTINNHVKTCREEQKNLHFFAP
:.::::::::: :::::::::::::::: :: . . ... ::: .::::: :
XP_016 CSPPIIHGNLTSDTIFIQHNGLIKIGSVWHRIFSNALPDDLRSPIRAEREELRNLHFFPP
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 EYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAIQLLEDPLQREFIQ
:::::.. :::::.::::::::::::::: ::.. : .:::. : . : :: .::::
XP_016 EYGEVAD-GTAVDIFSFGMCALEMAVLEIQTNGDTR-VTEEAIARARHSLSDPNMREFIL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 KCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENALEEITKNMDTSAV
:: .:::::.:. :::: .:::: :::::::::.. ::...:::..:: :: :: ::
XP_016 CCLARDPARRPSAHSLLFHRVLFEVHSLKLLAAHCFIQHQYLMPENVVEEKTKAMDLHAV
290 300 310 320 330 340
370 380 390 400 410
pF1KB9 LAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAF------GLPRPQQPQQEE
:::.: : : :.: ::. .:::::::::::::::: : :::: : ::
XP_016 LAELPR-PRRPPLQWRYSEVSFMELDKFLEDVRNGIYPLMNFAATRPLGLPRVLAPPPEE
350 360 370 380 390 400
420 430 440 450 460 470
pF1KB9 VTSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCD
: . .::::::: . :::::. ::::.: :. .. :::::: :::.:.:.:. :
XP_016 VQK------AKTPTPEPFDSETRKVIQMQCNLERSEDKARWHLTLLLVLEDRLHRQLTYD
410 420 430 440 450
480 490 500 510 520 530
pF1KB9 LMPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVTVSS
:.: . :. :..:
XP_016 LLPRR--PDEAGRLPGEHLPQVPWDPGLTRSPSPRGPCRGAAWAGHVGETPAPWGCPPPC
460 470 480 490 500 510
>>XP_016868868 (OMIM: 615563) PREDICTED: nuclear recepto (612 aa)
initn: 1762 init1: 948 opt: 1872 Z-score: 1124.1 bits: 217.9 E(85289): 7.1e-56
Smith-Waterman score: 1878; 63.4% identity (80.2% similar) in 464 aa overlap (44-493:17-469)
20 30 40 50 60 70
pF1KB9 SDPKVESSSSAPGLTSVSPPVTSTTSAASPEEEEESEDESEILEESPCGRWQKRREEVNQ
:.:.::::::.:::::::::::::::.:::
XP_016 MAAPEPAPRRAREREREREDESEDESDILEESPCGRWQKRREQVNQ
10 20 30 40
80 90 100 110 120 130
pF1KB9 RNVPGIDSAYLAMDTEEGVEVVWNEVQFSERKNYKLQEEKVRAVFDNLIQLEHLNIVKFH
:.::..:..:::::::::::::::..:..:: . .:::...::..:. ..: ::::.:
XP_016 GNMPGLQSTFLAMDTEEGVEVVWNELHFGDRKAFAAHEEKIQTVFEQLVLVDHPNIVKLH
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB9 KYWADIKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRWCTQILSALSYLHS
::: : .: :::::::::.:::::::::::::::::.:: .::::::::::::::.::.
XP_016 KYWLDTSEACARVIFITEYVSSGSLKQFLKKTKKNHKAMNARAWKRWCTQILSALSFLHA
110 120 130 140 150 160
200 210 220 230 240
pF1KB9 CDPPIIHGNLTCDTIFIQHNGLIKIGSV--------APDTINNHVKTCREEQKNLHFFAP
:.::::::::: :::::::::::::::: :: . . ... ::: .::::: :
XP_016 CSPPIIHGNLTSDTIFIQHNGLIKIGSVWHRIFSNALPDDLRSPIRAEREELRNLHFFPP
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 EYGEVTNVTTAVDIYSFGMCALEMAVLEIQGNGESSYVPQEAISSAIQLLEDPLQREFIQ
:::::.. :::::.::::::::::::::: ::.. : .:::. : . : :: .::::
XP_016 EYGEVAD-GTAVDIFSFGMCALEMAVLEIQTNGDTR-VTEEAIARARHSLSDPNMREFIL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 KCLQSEPARRPTARELLFHPALFEVPSLKLLAAHCIVGHQHMIPENALEEITKNMDTSAV
:: .:::::.:. :::: .:::: :::::::::.. ::...:::..:: :: :: ::
XP_016 CCLARDPARRPSAHSLLFHRVLFEVHSLKLLAAHCFIQHQYLMPENVVEEKTKAMDLHAV
290 300 310 320 330 340
370 380 390 400 410
pF1KB9 LAEIPAGPGREPVQTLYSQSPALELDKFLEDVRNGIYPLTAF------GLPRPQQPQQEE
:::.: : : :.: ::. .:::::::::::::::: : :::: : ::
XP_016 LAELPR-PRRPPLQWRYSEVSFMELDKFLEDVRNGIYPLMNFAATRPLGLPRVLAPPPEE
350 360 370 380 390 400
420 430 440 450 460 470
pF1KB9 VTSPVVPPSVKTPTPEPAEVETRKVVLMQCNIESVEEGVKHHLTLLLKLEDKLNRHLSCD
: . .::::::: . :::::. ::::.: :. .. :::::: :::.:.:.:. :
XP_016 VQK------AKTPTPEPFDSETRKVIQMQCNLERSEDKARWHLTLLLVLEDRLHRQLTYD
410 420 430 440 450
480 490 500 510 520 530
pF1KB9 LMPNENIPELAAELVQLGFISEADQSRLTSLLEETLNKFNFARNSTLNSAAVTVSS
:.: . :. :..:
XP_016 LLPRR--PDEAGRLPGEHLPQVPWDPGLTRSPSPRGPCRGAAWAGHVGETPAPWGCPPPC
460 470 480 490 500 510
535 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:59:42 2016 done: Sat Nov 5 14:59:44 2016
Total Scan time: 11.850 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]