Result of FASTA (ccds) for
pF1KB9957
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9957, 538 aa
1>>>pF1KB9957 538 - 538 aa - 538 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3677+/-0.00101; mu= 18.0104+/- 0.060
mean_var=65.0865+/-12.981, 0's: 0 Z-trim(102.2): 30 B-trim: 0 in 0/51
Lambda= 0.158975
statistics sampled from 6845 (6856) to 6845 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.211), width: 16
Scan time: 3.020
The best scores are: opt bits E(32554)
CCDS1379.1 TROVE2 gene_id:6738|Hs108|chr1 ( 538) 3541 821.5 0
CCDS41450.2 TROVE2 gene_id:6738|Hs108|chr1 ( 534) 3479 807.3 0
CCDS41449.1 TROVE2 gene_id:6738|Hs108|chr1 ( 525) 3379 784.3 0
CCDS53451.1 TROVE2 gene_id:6738|Hs108|chr1 ( 518) 3376 783.6 0
>>CCDS1379.1 TROVE2 gene_id:6738|Hs108|chr1 (538 aa)
initn: 3541 init1: 3541 opt: 3541 Z-score: 4387.1 bits: 821.5 E(32554): 0
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
490 500 510 520 530
>>CCDS41450.2 TROVE2 gene_id:6738|Hs108|chr1 (534 aa)
initn: 3479 init1: 3479 opt: 3479 Z-score: 4310.3 bits: 807.3 E(32554): 0
Smith-Waterman score: 3479; 100.0% identity (100.0% similar) in 528 aa overlap (1-528:1-528)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDPCKIPY
490 500 510 520 530
>>CCDS41449.1 TROVE2 gene_id:6738|Hs108|chr1 (525 aa)
initn: 3379 init1: 3379 opt: 3379 Z-score: 4186.5 bits: 784.3 E(32554): 0
Smith-Waterman score: 3379; 99.6% identity (100.0% similar) in 516 aa overlap (1-516:1-516)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
::::::::::::::::::::::::::::::::::..
CCDS41 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRALQNTLLNKSF
490 500 510 520
>>CCDS53451.1 TROVE2 gene_id:6738|Hs108|chr1 (518 aa)
initn: 3376 init1: 3376 opt: 3376 Z-score: 4182.9 bits: 783.6 E(32554): 0
Smith-Waterman score: 3376; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
::::::::::::::::::::::::::::::::::
CCDS53 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRDTVK
490 500 510
538 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:17:46 2016 done: Sat Nov 5 08:17:47 2016
Total Scan time: 3.020 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]