FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9973, 554 aa
  1>>>pF1KB9973 554 - 554 aa - 554 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.0410+/-0.00105; mu= -12.2498+/- 0.062
 mean_var=361.6347+/-73.670, 0's: 0 Z-trim(114.7): 13  B-trim: 0 in 0/51
 Lambda= 0.067443
 statistics sampled from 15233 (15243) to 15233 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.468), width:  16
 Scan time:  4.290

The best scores are:                                      opt bits E(32554)
CCDS816.1 CSF1 gene_id:1435|Hs108|chr1             ( 554) 3775 381.3 1.7e-105
CCDS817.1 CSF1 gene_id:1435|Hs108|chr1             ( 438) 2494 256.5 4.7e-68
CCDS30797.1 CSF1 gene_id:1435|Hs108|chr1           ( 256) 1215 132.0 8.7e-31


>>CCDS816.1 CSF1 gene_id:1435|Hs108|chr1                  (554 aa)
 initn: 3775 init1: 3775 opt: 3775  Z-score: 2007.5  bits: 381.3 E(32554): 1.7e-105
Smith-Waterman score: 3775; 99.8% identity (99.8% similar) in 554 aa overlap (1-554:1-554)

               10        20        30        40        50        60
pF1KB9 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QDVVTKPDCNCLYPKAIPSSDPASVSPHQPLAPSMAPVAGLTWEDSEGTEGSSLLPGEQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QDVVTKPDCNCLYPKAIPSSDPASVSPHQPLAPSMAPVAGLTWEDSEGTEGSSLLPGEQP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LHTVDPGSAKQRPPRSTCQSFEPPETPVVKDSTIGGSPQPRPSVGAFNPGMEDILDSAMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LHTVDPGSAKQRPPRSTCQSFEPPETPVVKDSTIGGSPQPRPSVGAFNPGMEDILDSAMG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 TNWVPEEASGEASEIPVPQGTELSPSRPGGGSMQTEPARPSNFLSASSPLPASAKGQQPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TNWVPEEASGEASEIPVPQGTELSPSRPGGGSMQTEPARPSNFLSASSPLPASAKGQQPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 DVTGTALPRVGPVRPTGQDWNHTPQKTDHPSALLRDPPEPGSPRISSLRPQGLSNPSTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DVTGTALPRVGPVRPTGQDWNHTPQKTDHPSALLRDPPEPGSPRISSLRPQGLSNPSTLS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 AQPQLSRSHSSGSVLPLGELEGRRSTRDRRSPAEPEGGPASEGAARPLPRFNSVPLTDTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 AQPQLSRSHSSGSVLPLGELEGRRSTRDRRSPAEPEGGPASEGAARPLPRFNSVPLTDTG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 HERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPEG
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HERQSEGSFSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPEG
              490       500       510       520       530       540

              550    
pF1KB9 SPLTQDDRQVELPV
       ::::::::::::::
CCDS81 SPLTQDDRQVELPV
              550    

>>CCDS817.1 CSF1 gene_id:1435|Hs108|chr1                  (438 aa)
 initn: 2494 init1: 2494 opt: 2494  Z-score: 1335.3  bits: 256.5 E(32554): 4.7e-68
Smith-Waterman score: 2733; 78.9% identity (78.9% similar) in 554 aa overlap (1-554:1-438)

               10        20        30        40        50        60
pF1KB9 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QDVVTKPDCNCLYPKAIPSSDPASVSPHQPLAPSMAPVAGLTWEDSEGTEGSSLLPGEQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QDVVTKPDCNCLYPKAIPSSDPASVSPHQPLAPSMAPVAGLTWEDSEGTEGSSLLPGEQP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LHTVDPGSAKQRPPRSTCQSFEPPETPVVKDSTIGGSPQPRPSVGAFNPGMEDILDSAMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LHTVDPGSAKQRPPRSTCQSFEPPETPVVKDSTIGGSPQPRPSVGAFNPGMEDILDSAMG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 TNWVPEEASGEASEIPVPQGTELSPSRPGGGSMQTEPARPSNFLSASSPLPASAKGQQPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TNWVPEEASGEASEIPVPQGTELSPSRPGGGSMQTEPARPSNFLSASSPLPASAKGQQPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 DVTGTALPRVGPVRPTGQDWNHTPQKTDHPSALLRDPPEPGSPRISSLRPQGLSNPSTLS
       ::::                                                        
CCDS81 DVTG--------------------------------------------------------
                                                                   

              430       440       450       460       470       480
pF1KB9 AQPQLSRSHSSGSVLPLGELEGRRSTRDRRSPAEPEGGPASEGAARPLPRFNSVPLTDTG
                                                                   
CCDS81 ------------------------------------------------------------
                                                                   

              490       500       510       520       530       540
pF1KB9 HERQSEGSSSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPEG
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 HERQSEGSFSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQPEG
          370       380       390       400       410       420    

              550    
pF1KB9 SPLTQDDRQVELPV
       ::::::::::::::
CCDS81 SPLTQDDRQVELPV
          430        

>>CCDS30797.1 CSF1 gene_id:1435|Hs108|chr1                (256 aa)
 initn: 1239 init1: 1215 opt: 1215  Z-score: 666.2  bits: 132.0 E(32554): 8.7e-31
Smith-Waterman score: 1215; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)

               10        20        30        40        50        60
pF1KB9 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MTAPGAAGRCPPTTWLGSLLLLVCLLASRSITEEVSEYCSHMIGSGHLQSLQRLIDSQME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 TSCQITFEFVDQEQLKDPVCYLKKAFLLVQDIMEDTMRFRDNTPNAIAIVQLQELSLRLK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SCFTKDYEEHDKACVRTFYETPLQLLEKVKNVFNETKNLLDKDWNIFSKNCNNSFAECSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QDVVTKPDCNCLYPKAIPSSDPASVSPHQPLAPSMAPVAGLTWEDSEGTEGSSLLPGEQP
       :                                                           
CCDS30 QGHERQSEGSFSPQLQESVFHLLVPSVILVLLAVGGLLFYRWRRRSHQEPQRADSPLEQP
              190       200       210       220       230       240




554 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 15:01:15 2016 done: Sat Nov  5 15:01:15 2016
 Total Scan time:  4.290 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]