FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9977, 557 aa
  1>>>pF1KB9977 557 - 557 aa - 557 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2641+/-0.00108; mu= 13.1648+/- 0.065
 mean_var=78.5419+/-15.712, 0's: 0 Z-trim(102.9): 44  B-trim: 3 in 1/51
 Lambda= 0.144718
 statistics sampled from 7139 (7170) to 7139 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.22), width:  16
 Scan time:  2.850

The best scores are:                                      opt bits E(32554)
CCDS13624.1 IFNAR1 gene_id:3454|Hs108|chr21        ( 557) 3694 781.5       0
CCDS13623.1 IL10RB gene_id:3588|Hs108|chr21        ( 325)  298 72.4 9.5e-13


>>CCDS13624.1 IFNAR1 gene_id:3454|Hs108|chr21             (557 aa)
 initn: 3694 init1: 3694 opt: 3694  Z-score: 4170.4  bits: 781.5 E(32554):    0
Smith-Waterman score: 3694; 100.0% identity (100.0% similar) in 557 aa overlap (1-557:1-557)

               10        20        30        40        50        60
pF1KB9 MMVVLLGATTLVLVAVAPWVLSAAAGGKNLKSPQKVEVDIIDDNFILRWNRSDESVGNVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MMVVLLGATTLVLVAVAPWVLSAAAGGKNLKSPQKVEVDIIDDNFILRWNRSDESVGNVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 NQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 GIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 VIQDYPLIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VIQDYPLIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 FSDAVCEKTKPGNTSKIWLIVGICIALFALPFVIYAAKVFLRCINYVFFPSLKPSSSIDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FSDAVCEKTKPGNTSKIWLIVGICIALFALPFVIYAAKVFLRCINYVFFPSLKPSSSIDE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 YFSEQPLKNLLLSTSEEQIEKCFIIENISTIATVEETNQTDEDHKKYSSQTSQDSGNYSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YFSEQPLKNLLLSTSEEQIEKCFIIENISTIATVEETNQTDEDHKKYSSQTSQDSGNYSN
              490       500       510       520       530       540

              550       
pF1KB9 EDESESKTSEELQQDFV
       :::::::::::::::::
CCDS13 EDESESKTSEELQQDFV
              550       

>>CCDS13623.1 IL10RB gene_id:3588|Hs108|chr21             (325 aa)
 initn: 218 init1: 121 opt: 298  Z-score: 342.3  bits: 72.4 E(32554): 9.5e-13
Smith-Waterman score: 357; 25.0% identity (60.2% similar) in 324 aa overlap (209-521:2-308)

      180       190       200       210       220       230        
pF1KB9 RIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVS
                                     .:..: .    :. ... . .:::::....
CCDS13                              MAWSLGSWLG-GCLLVSALGMVPPPENVRMN
                                            10         20        30

      240          250       260       270       280       290     
pF1KB9 VQNQNYVLKWD---YTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQ
         : . .:.:.   .. .:.:: .:.:            :.  :   : :.  :.: : .
CCDS13 SVNFKNILQWESPAFAKGNLTFTAQYLS-----------YRIFQ-DKCMNTTLTECDF-S
               40        50                   60         70        

         300       310       320       330       340       350     
pF1KB9 NVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQ
       .. . : . :::.:  ... : : . : :    .... :: .... :.::.:. . ::: 
CCDS13 SLSKYGDHTLRVRAEFADEHSDWVN-ITFCPVDDTIIGPPGMQVEVLADSLHMRFLAPKI
        80        90       100        110       120       130      

           360         370       380       390       400       410 
pF1KB9 SGN--TPVIQDY--PLIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTM
        ..  : ....      :.. .:.: .. . .:  .    .. ::.: :.:::..:.   
CCDS13 ENEYETWTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLP
        140       150       160       170       180       190      

             420       430       440        450       460       470
pF1KB9 DEKLNKSSVFSDAVCEKTKPGNTSKIWLIVGICIA-LFALPFVIYAAKVFLRCINYVFFP
       :.  ::.. .:. :::.:   .:   :... : .: .: . ... .  ..: :.      
CCDS13 DR--NKAGEWSEPVCEQTTHDETVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKY
          200       210       220       230       240       250    

              480          490       500       510       520       
pF1KB9 SLKPSSSIDEYFSE---QPLKNLLLSTSEEQIEKCFIIENISTIATVEETNQTDEDHKKY
       ...: .:. ....:   .: .: ::  :    ..  .....:.::   :... .      
CCDS13 AFSPRNSLPQHLKEFLGHPHHNTLLFFSFPLSDENDVFDKLSVIAEDSESGKQNPGDSCS
          260       270       280       290       300       310    

       530       540       550       
pF1KB9 SSQTSQDSGNYSNEDESESKTSEELQQDFV
                                     
CCDS13 LGTPPGQGPQS                   
          320                        




557 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:55:59 2016 done: Fri Nov  4 08:56:00 2016
 Total Scan time:  2.850 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]