FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9979, 558 aa 1>>>pF1KB9979 558 - 558 aa - 558 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7967+/-0.00092; mu= 15.5011+/- 0.055 mean_var=63.7314+/-12.940, 0's: 0 Z-trim(105.0): 9 B-trim: 0 in 0/50 Lambda= 0.160656 statistics sampled from 8182 (8186) to 8182 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.251), width: 16 Scan time: 3.350 The best scores are: opt bits E(32554) CCDS35071.1 FANCC gene_id:2176|Hs108|chr9 ( 558) 3742 876.3 0 CCDS75861.1 FANCC gene_id:2176|Hs108|chr9 ( 492) 3004 705.2 4.5e-203 >>CCDS35071.1 FANCC gene_id:2176|Hs108|chr9 (558 aa) initn: 3742 init1: 3742 opt: 3742 Z-score: 4682.8 bits: 876.3 E(32554): 0 Smith-Waterman score: 3742; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558) 10 20 30 40 50 60 pF1KB9 MAQDSVDLSCDYQFWMQKLSVWDQASTLETQQDTCLHVAQFQEFLRKMYEALKEMDSNTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 MAQDSVDLSCDYQFWMQKLSVWDQASTLETQQDTCLHVAQFQEFLRKMYEALKEMDSNTV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 IERFPTIGQLLAKACWNPFILAYDESQKILIWCLCCLINKEPQNSGQSKLNSWIQGVLSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 IERFPTIGQLLAKACWNPFILAYDESQKILIWCLCCLINKEPQNSGQSKLNSWIQGVLSH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 ILSALRFDKEVALFTQGLGYAPIDYYPGLLKNMVLSLASELRENHLNGFNTQRRMAPERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 ILSALRFDKEVALFTQGLGYAPIDYYPGLLKNMVLSLASELRENHLNGFNTQRRMAPERV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 ASLSRVCVPLITLTDVDPLVEALLICHGREPQEILQPEFFEAVNEAILLKKISLPMSAVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 ASLSRVCVPLITLTDVDPLVEALLICHGREPQEILQPEFFEAVNEAILLKKISLPMSAVV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 CLWLRHLPSLEKAMLHLFEKLISSERNCLRRIECFIKDSSLPQAACHPAIFRVVDEMFRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 CLWLRHLPSLEKAMLHLFEKLISSERNCLRRIECFIKDSSLPQAACHPAIFRVVDEMFRC 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 ALLETDGALEIIATIQVFTQCFVEALEKASKQLRFALKTYFPYTSPSLAMVLLQDPQDIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 ALLETDGALEIIATIQVFTQCFVEALEKASKQLRFALKTYFPYTSPSLAMVLLQDPQDIP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 RGHWLQTLKHISELLREAVEDQTHGSCGGPFESWFLFIHFGGWAEMVAEQLLMSAAEPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 RGHWLQTLKHISELLREAVEDQTHGSCGGPFESWFLFIHFGGWAEMVAEQLLMSAAEPPT 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 ALLWLLAFYYGPRDGRQQRAQTMVQVKAVLGHLLAMSRSSSLSAQDLQTVAGQGTDTDLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 ALLWLLAFYYGPRDGRQQRAQTMVQVKAVLGHLLAMSRSSSLSAQDLQTVAGQGTDTDLR 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB9 APAQQLIRHLLLNFLLWAPGGHTIAWDVITLMAHTAEITHEIIGFLDQTLYRWNRLGIES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 APAQQLIRHLLLNFLLWAPGGHTIAWDVITLMAHTAEITHEIIGFLDQTLYRWNRLGIES 490 500 510 520 530 540 550 pF1KB9 PRSEKLARELLKELRTQV :::::::::::::::::: CCDS35 PRSEKLARELLKELRTQV 550 >>CCDS75861.1 FANCC gene_id:2176|Hs108|chr9 (492 aa) initn: 3004 init1: 3004 opt: 3004 Z-score: 3759.2 bits: 705.2 E(32554): 4.5e-203 Smith-Waterman score: 3004; 99.8% identity (100.0% similar) in 444 aa overlap (1-444:1-444) 10 20 30 40 50 60 pF1KB9 MAQDSVDLSCDYQFWMQKLSVWDQASTLETQQDTCLHVAQFQEFLRKMYEALKEMDSNTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MAQDSVDLSCDYQFWMQKLSVWDQASTLETQQDTCLHVAQFQEFLRKMYEALKEMDSNTV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 IERFPTIGQLLAKACWNPFILAYDESQKILIWCLCCLINKEPQNSGQSKLNSWIQGVLSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 IERFPTIGQLLAKACWNPFILAYDESQKILIWCLCCLINKEPQNSGQSKLNSWIQGVLSH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 ILSALRFDKEVALFTQGLGYAPIDYYPGLLKNMVLSLASELRENHLNGFNTQRRMAPERV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 ILSALRFDKEVALFTQGLGYAPIDYYPGLLKNMVLSLASELRENHLNGFNTQRRMAPERV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 ASLSRVCVPLITLTDVDPLVEALLICHGREPQEILQPEFFEAVNEAILLKKISLPMSAVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 ASLSRVCVPLITLTDVDPLVEALLICHGREPQEILQPEFFEAVNEAILLKKISLPMSAVV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 CLWLRHLPSLEKAMLHLFEKLISSERNCLRRIECFIKDSSLPQAACHPAIFRVVDEMFRC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 CLWLRHLPSLEKAMLHLFEKLISSERNCLRRIECFIKDSSLPQAACHPAIFRVVDEMFRC 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 ALLETDGALEIIATIQVFTQCFVEALEKASKQLRFALKTYFPYTSPSLAMVLLQDPQDIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 ALLETDGALEIIATIQVFTQCFVEALEKASKQLRFALKTYFPYTSPSLAMVLLQDPQDIP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 RGHWLQTLKHISELLREAVEDQTHGSCGGPFESWFLFIHFGGWAEMVAEQLLMSAAEPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 RGHWLQTLKHISELLREAVEDQTHGSCGGPFESWFLFIHFGGWAEMVAEQLLMSAAEPPT 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 ALLWLLAFYYGPRDGRQQRAQTMVQVKAVLGHLLAMSRSSSLSAQDLQTVAGQGTDTDLR :::::::::::::::::::::::. CCDS75 ALLWLLAFYYGPRDGRQQRAQTMMAYVMATCRHGDLQPCGQRRSPVPTEVARDETLPAHS 430 440 450 460 470 480 558 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 08:08:52 2016 done: Sat Nov 5 08:08:53 2016 Total Scan time: 3.350 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]