Result of FASTA (ccds) for
pF1KB9984
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9984, 711 aa
1>>>pF1KB9984 711 - 711 aa - 711 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6462+/-0.000908; mu= 17.5497+/- 0.054
mean_var=66.7061+/-12.954, 0's: 0 Z-trim(105.4): 15 B-trim: 0 in 0/50
Lambda= 0.157033
statistics sampled from 8406 (8412) to 8406 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.258), width: 16
Scan time: 3.820
The best scores are: opt bits E(32554)
CCDS33747.1 LTF gene_id:4057|Hs108|chr3 ( 710) 4864 1111.3 0
CCDS82763.1 LTF gene_id:4057|Hs108|chr3 ( 708) 4840 1105.9 0
CCDS56251.1 LTF gene_id:4057|Hs108|chr3 ( 666) 4571 1044.9 0
CCDS3080.1 TF gene_id:7018|Hs108|chr3 ( 698) 1861 431.0 3e-120
CCDS3325.1 MELTF gene_id:4241|Hs108|chr3 ( 738) 899 213.0 1.3e-54
CCDS3326.1 MELTF gene_id:4241|Hs108|chr3 ( 302) 416 103.5 5e-22
>>CCDS33747.1 LTF gene_id:4057|Hs108|chr3 (710 aa)
initn: 4750 init1: 4750 opt: 4864 Z-score: 5949.1 bits: 1111.3 E(32554): 0
Smith-Waterman score: 4864; 99.6% identity (99.9% similar) in 711 aa overlap (1-711:1-710)
10 20 30 40 50 60
pF1KB9 MKLVFLVLLFLGALGLCLAGRRRRSVQWCTVSQPEATKCFQWQRNMRRVRGPPVSCIKRD
::::::::::::::::::::::: :::::.:::::::::::::::::.::::::::::::
CCDS33 MKLVFLVLLFLGALGLCLAGRRR-SVQWCAVSQPEATKCFQWQRNMRKVRGPPVSCIKRD
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 SPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 GGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB9 ADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSD
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB9 EAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGK
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB9 DKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAA
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB9 RRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVY
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB9 TAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCH
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB9 TAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPN
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB9 SNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKR
540 550 560 570 580 590
610 620 630 640 650 660
pF1KB9 KPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKN
600 610 620 630 640 650
670 680 690 700 710
pF1KB9 LLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
660 670 680 690 700 710
>>CCDS82763.1 LTF gene_id:4057|Hs108|chr3 (708 aa)
initn: 2631 init1: 2631 opt: 4840 Z-score: 5919.7 bits: 1105.9 E(32554): 0
Smith-Waterman score: 4840; 99.3% identity (99.6% similar) in 711 aa overlap (1-711:1-708)
10 20 30 40 50 60
pF1KB9 MKLVFLVLLFLGALGLCLAGRRRRSVQWCTVSQPEATKCFQWQRNMRRVRGPPVSCIKRD
::::::::::::::::::::::: :::::.:::::::::::::::::.::::::::::::
CCDS82 MKLVFLVLLFLGALGLCLAGRRR-SVQWCAVSQPEATKCFQWQRNMRKVRGPPVSCIKRD
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 SPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB9 GGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPG
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB9 ADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSD
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB9 EAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGK
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB9 DKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAA
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB9 RRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVY
:::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
CCDS82 RRARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIA--LKGEADAMSLDGGYVY
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB9 TAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCH
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB9 TAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPN
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB9 SNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKR
540 550 560 570 580 590
610 620 630 640 650 660
pF1KB9 KPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKN
600 610 620 630 640 650
670 680 690 700 710
pF1KB9 LLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
660 670 680 690 700
>>CCDS56251.1 LTF gene_id:4057|Hs108|chr3 (666 aa)
initn: 4571 init1: 4571 opt: 4571 Z-score: 5590.8 bits: 1044.9 E(32554): 0
Smith-Waterman score: 4571; 99.8% identity (100.0% similar) in 666 aa overlap (46-711:1-666)
20 30 40 50 60 70
pF1KB9 LCLAGRRRRSVQWCTVSQPEATKCFQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAENRAD
::.:::::::::::::::::::::::::::
CCDS56 MRKVRGPPVSCIKRDSPIQCIQAIAENRAD
10 20 30
80 90 100 110 120 130
pF1KB9 AVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSC
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB9 HTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPGADKGQFPNLCRLCAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 HTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPGADKGQFPNLCRLCAG
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB9 TGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAERDEYELLCPDNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAERDEYELLCPDNT
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB9 RKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQ
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB9 KDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAARRARVVWCAVGEQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAARRARVVWCAVGEQEL
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB9 RKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYTAGKCGLVPVLAENY
340 350 360 370 380 390
440 450 460 470 480 490
pF1KB9 KSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 KSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGL
400 410 420 430 440 450
500 510 520 530 540 550
pF1KB9 LFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCL
460 470 480 490 500 510
560 570 580 590 600 610
pF1KB9 AENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAP
520 530 540 550 560 570
620 630 640 650 660 670
pF1KB9 NHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKNLLFNDNTECLARLHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 NHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKNLLFNDNTECLARLHG
580 590 600 610 620 630
680 690 700 710
pF1KB9 KTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
::::::::::::::::::::::::::::::::::::
CCDS56 KTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
640 650 660
>>CCDS3080.1 TF gene_id:7018|Hs108|chr3 (698 aa)
initn: 2547 init1: 626 opt: 1861 Z-score: 2272.4 bits: 431.0 E(32554): 3e-120
Smith-Waterman score: 2890; 60.1% identity (80.7% similar) in 715 aa overlap (1-710:1-697)
10 20 30 40 50
pF1KB9 MKLVFLVLLFLGALGLCLAGRRRRSVQWCTVSQPEATKCFQWQRNMRRV---RGPPVSCI
:.:. .:: ..:::::: ..:.::.::. ::::: ... .:. : :: :.:.
CCDS30 MRLAVGALLVCAVLGLCLA-VPDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACV
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 KRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAV
:. : ..::.::: :.:::::::.:..:.: ::: .:.::.:: ::....:.: ::::::
CCDS30 KKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAEFYGSKEDPQTFYYAVAV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 VKKGGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASC
::: ..::.:.:.: ::::::: :.::::.::: : . . : .:.: ::: :::.::
CCDS30 VKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLL--YCDLPEPRKPLEKAVANFFSGSC
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 VPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFED
.: :: .::.::.:: : :. :. . ::.::::::::.::::::::...::.::.
CCDS30 APCADGTDFPQLCQLCPG-----CGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFEN
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB9 LSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEK
:...:.::.::::: ::::::::..::::::.::::.:::::..:::: ::.:: ::::.
CCDS30 LANKADRDQYELLCLDNTRKPVDEYKDCHLAQVPSHTVVARSMGGKEDLIWELLNQAQEH
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB9 FGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSE-E
:::::: .::::.:: : ::::::::: :: .::::.:. .::: : :::.:::..
CCDS30 FGKDKSKEFQLFSSPHG-KDLLFKDSAHGFLKVPPRMDAKMYLGYEYVTAIRNLREGTCP
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB9 EVAARRARVV-WCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLD
:. . . . : :::....: ::..:: : :.. : :: ::::::: ...:::::::::
CCDS30 EAPTDECKPVKWCALSHHERLKCDEWSVNSVGKIECVSAETTEDCIAKIMNGEADAMSLD
360 370 380 390 400 410
420 430 440 450 460 470
pF1KB9 GGYVYTAGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKG
::.:: ::::::::::::::. .:: :: : : ::.:.:::..: ..:::...::
CCDS30 GGFVYIAGKCGLVPVLAENYN---KSD---NCEDTPEAGYFAIAVVKKSASDLTWDNLKG
420 430 440 450 460
480 490 500 510 520 530
pF1KB9 KKSCHTAVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGEN
:::::::: ::::::::::::.:. . :.:::.::..::::: :.:: ::.:. : :
CCDS30 KKSCHTAVGRTAGWNIPMGLLYNKINHCRFDEFFSEGCAPGSKKDSSLCKLCMGS--GLN
470 480 490 500 510 520
540 550 560 570 580 590
pF1KB9 KCVPNSNERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLC
: ::..: :::::::::::.:. ::::::: :: ::: :.: . :::.:. :. :::
CCDS30 LCEPNNKEGYYGYTGAFRCLVEK-GDVAFVKHQTVPQNTGGKNPDPWAKNLNEKDYELLC
530 540 550 560 570 580
600 610 620 630 640 650
pF1KB9 LDGKRKPVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQ
::: :::: : .:::: :::::::.: :: ....: .:: :: : .:: .::::.
CCDS30 LDGTRKPVEEYANCHLARAPNHAVVTRKDKEACVHKILRQQQHLFGSNVTDCSGNFCLFR
590 600 610 620 630 640
660 670 680 690 700 710
pF1KB9 SETKNLLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPLLEACEFLRK
::::.::: :.: :::.:: ..::::::: .:: .. ::.::::: ::::: : :
CCDS30 SETKDLLFRDDTVCLAKLHDRNTYEKYLGEEYVKAVGNLRKCSTSSLLEACTFRRP
650 660 670 680 690
>>CCDS3325.1 MELTF gene_id:4241|Hs108|chr3 (738 aa)
initn: 1033 init1: 461 opt: 899 Z-score: 1094.1 bits: 213.0 E(32554): 1.3e-54
Smith-Waterman score: 1645; 40.4% identity (67.1% similar) in 730 aa overlap (12-698:6-710)
10 20 30 40 50
pF1KB9 MKLVFLVLLFLGALGLCLAGRRRRS---VQWCTVSQPEATKCFQWQRNMRRVR-GPPVSC
::: : :: : . :.::..:.:: :: . .. .:.. : . :
CCDS33 MRGPSGALWLLLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLC
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 IKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVA
.. : .:.: :: ..:::.::::: ::::: . :.::..::: ... : :::::
CCDS33 VRGTSADHCVQLIAAQEADAITLDGGAIYEAG-KEHGLKPVVGEVY--DQEVGTSYYAVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 VVKKGGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSAS
::.... .. :.:.::::::. ::.:::::.: : . . ::. .:..:
CCDS33 VVRRSSHVTIDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 CVPGADKGQFP-NLCRLCAG--TGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIREST
::::: . .. .::::: : .::. : : : :..:::::.:: .:::::::...::
CCDS33 CVPGAGETSYSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHST
180 190 200 210 220 230
240 250 260 270 280
pF1KB9 VFEDLSDEAE--------RDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKED
:.:. . .. ...:::: :..: : ....:::::::.::::.:. .
CCDS33 VLENTDGKTLPSWGQALLSQDFELLCRDGSRADVTEWRQCHLARVPAHAVVVRA-DTDGG
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB9 AIWNLLRQAQEKFGKDKSPKFQLFGSPS-GQKDLLFKDSAIGFSRVPPRIDSGLY---LG
:. :: ..:. :... : .::.:.: . ::::::::::. :.. : : . : ::
CCDS33 LIFRLLNEGQRLFSHEGS-SFQMFSSEAYGQKDLLFKDST---SELVP-IATQTYEAWLG
300 310 320 330 340
350 360 370 380 390
pF1KB9 SGYFTAIQNLRKSEEEVAARRARVVWCAVGEQELRKCNQWS-----GLSEGSVTCSSAST
:. :...: . ... . ::... :..::.. . . . : ::..
CCDS33 HEYLHAMKGLLCDPNRLPPY---LRWCVLSTPEIQKCGDMAVAFRRQRLKPEIQCVSAKS
350 360 370 380 390 400
400 410 420 430 440 450
pF1KB9 TEDCIALVLKGEADAMSLDGGYVYTAGKC-GLVPVLAENYKSQQSSDPDPNCVDRPVEGY
. :. . ..::..:.: .::::: ::::. .:.: ..::. .:
CCDS33 PQHCMERIQAEQVDAVTLSGEDIYTAGKTYGLVPAAGEHYAPEDSSN-----------SY
410 420 430 440 450
460 470 480 490 500
pF1KB9 LAVAVVRR-SDTSLTWNSVKGKKSCHTAVDRTAGWNIPMGLL----FNQTGSCKF----D
.:::::: :. ..: . ..::.:::.. :::..:.: : : . .: .
CCDS33 YVVAVVRRDSSHAFTLDELRGKRSCHAGFGSPAGWDVPVGALIQRGFIRPKDCDVLTAVS
460 470 480 490 500 510
510 520 530 540 550 560
pF1KB9 EYFSQSCAPGSDPR---SNLCALCIGDEQGENKCVPNSNERYYGYTGAFRCLAENAGDVA
:.:. ::.: ..:. :.:::::.:::::.:::: ::.:::::: ::::::.:::::::
CCDS33 EFFNASCVPVNNPKNYPSSLCALCVGDEQGRNKCVGNSQERYYGYRGAFRCLVENAGDVA
520 530 540 550 560 570
570 580 590 600 610 620
pF1KB9 FVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKRKPVTEARSCHLAMAPNHAVVSRM
::. .::..::.:.:.: :: .:. :. ::: .: : :.. .:.::. : :::. :
CCDS33 FVRHTTVFDNTNGHNSEPWAAELRSEDYELLCPNGARAEVSQFAACNLAQIPPHAVMVRP
580 590 600 610 620 630
630 640 650 660 670
pF1KB9 D-KVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSET---KNLLFNDNTECLARLHGKTTY
: .. . .: . : :: . . . : .:.: . ..:::.: : . . ::::
CCDS33 DTNIFTVYGLLDKAQDLFGDDHNK--NGFKMFDSSNYHGQDLLFKDATVRAVPVGEKTTY
640 650 660 670 680
680 690 700 710
pF1KB9 EKYLGPQYVAGITNL--KKCSTSPLLEACEFLRK
. .:: .:::.. .. ..::
CCDS33 RGWLGLDYVAALEGMSSQQCSGAAAPAPGAPLLPLLLPALAARLLPPAL
690 700 710 720 730
>>CCDS3326.1 MELTF gene_id:4241|Hs108|chr3 (302 aa)
initn: 525 init1: 240 opt: 416 Z-score: 508.9 bits: 103.5 E(32554): 5e-22
Smith-Waterman score: 665; 39.0% identity (64.8% similar) in 315 aa overlap (12-319:6-301)
10 20 30 40 50
pF1KB9 MKLVFLVLLFLGALGLCLAGRRRRS---VQWCTVSQPEATKCFQWQRNMRRVR-GPPVSC
::: : :: : . :.::..:.:: :: . .. .:.. : . :
CCDS33 MRGPSGALWLLLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLC
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 IKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVA
.. : .:.: :: ..:::.::::: ::::: . :.::..::: : : :::::
CCDS33 VRGTSADHCVQLIAAQEADAITLDGGAIYEAG-KEHGLKPVVGEVYDQEVG--TSYYAVA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB9 VVKKGGSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSAS
::.... .. :.:.::::::. ::.:::::.: : . . ::. .:..:
CCDS33 VVRRSSHVTIDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 CVPGADKGQFP-NLCRLCAG--TGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIREST
::::: . .. .::::: : .::. : : : :..:::::.:: .:::::::...::
CCDS33 CVPGAGETSYSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHST
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB9 VFEDLSDEAERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQ
:.:. .::. : .:. . .. . .. :.: . :.. .. : .
CCDS33 VLEN-TDES---------P--SRRQTWTRSEEEEGECPAHEEARRTMRSSAGQAW---KW
240 250 260 270
300 310 320 330 340 350
pF1KB9 AQEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRK
: . .:.: : . ::. . ..:.:
CCDS33 APVHRPQDESDKGE-FGKRAKSRDMLG
280 290 300
711 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:04:10 2016 done: Sat Nov 5 16:04:11 2016
Total Scan time: 3.820 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]