FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0004, 486 aa
  1>>>pF1KE0004 486 - 486 aa - 486 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5658+/-0.000792; mu= 16.5903+/- 0.047
 mean_var=69.6737+/-14.252, 0's: 0 Z-trim(108.1): 17  B-trim: 252 in 1/49
 Lambda= 0.153653
 statistics sampled from 9996 (10000) to 9996 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.307), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(32554)
CCDS8471.1 FOXRED1 gene_id:55572|Hs108|chr11       ( 486) 3290 738.4 4.1e-213


>>CCDS8471.1 FOXRED1 gene_id:55572|Hs108|chr11            (486 aa)
 initn: 3290 init1: 3290 opt: 3290  Z-score: 3939.6  bits: 738.4 E(32554): 4.1e-213
Smith-Waterman score: 3290; 100.0% identity (100.0% similar) in 486 aa overlap (1-486:1-486)

               10        20        30        40        50        60
pF1KE0 MIRRVLPHGMGRGLLTRRPGTRRGGFSLDWDGKVSEIKKKIKSILPGRSCDLLQDTSHLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MIRRVLPHGMGRGLLTRRPGTRRGGFSLDWDGKVSEIKKKIKSILPGRSCDLLQDTSHLP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 PEHSDVVIVGGGVLGLSVAYWLKKLESRRGAIRVLVVERDHTYSQASTGLSVGGICQQFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 PEHSDVVIVGGGVLGLSVAYWLKKLESRRGAIRVLVVERDHTYSQASTGLSVGGICQQFS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LPENIQLSLFSASFLRNINEYLAVVDAPPLDLRFNPSGYLLLASEKDAAAMESNVKVQRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 LPENIQLSLFSASFLRNINEYLAVVDAPPLDLRFNPSGYLLLASEKDAAAMESNVKVQRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EGAKVSLMSPDQLRNKFPWINTEGVALASYGMEDEGWFDPWCLLQGLRRKVQSLGVLFCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 EGAKVSLMSPDQLRNKFPWINTEGVALASYGMEDEGWFDPWCLLQGLRRKVQSLGVLFCQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GEVTRFVSSSQRMLTTDDKAVVLKRIHEVHVKMDRSLEYQPVECAIVINAAGAWSAQIAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 GEVTRFVSSSQRMLTTDDKAVVLKRIHEVHVKMDRSLEYQPVECAIVINAAGAWSAQIAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LAGVGEGPPGTLQGTKLPVEPRKRYVYVWHCPQGPGLETPLVADTSGAYFRREGLGSNYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 LAGVGEGPPGTLQGTKLPVEPRKRYVYVWHCPQGPGLETPLVADTSGAYFRREGLGSNYL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 GGRSPTEQEEPDPANLEVDHDFFQDKVWPHLALRVPAFETLKVQSAWAGYYDYNTFDQNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 GGRSPTEQEEPDPANLEVDHDFFQDKVWPHLALRVPAFETLKVQSAWAGYYDYNTFDQNG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 VVGPHPLVVNMYFATGFSGHGLQQAPGIGRAVAEMVLKGRFQTIDLSPFLFTRFYLGEKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VVGPHPLVVNMYFATGFSGHGLQQAPGIGRAVAEMVLKGRFQTIDLSPFLFTRFYLGEKI
              430       440       450       460       470       480

             
pF1KE0 QENNII
       ::::::
CCDS84 QENNII
             




486 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:45:17 2016 done: Fri Nov  4 08:45:18 2016
 Total Scan time:  3.130 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]