FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0007, 518 aa
  1>>>pF1KE0007 518 - 518 aa - 518 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7996+/-0.000923; mu= 16.0420+/- 0.055
 mean_var=74.1417+/-14.758, 0's: 0 Z-trim(105.8): 21  B-trim: 0 in 0/51
 Lambda= 0.148951
 statistics sampled from 8622 (8630) to 8622 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.265), width:  16
 Scan time:  3.290

The best scores are:                                      opt bits E(32554)
CCDS55969.1 VWA9 gene_id:81556|Hs108|chr15         ( 461) 2965 646.7 1.7e-185
CCDS45283.1 VWA9 gene_id:81556|Hs108|chr15         ( 439) 2937 640.6  1e-183


>>CCDS55969.1 VWA9 gene_id:81556|Hs108|chr15              (461 aa)
 initn: 2965 init1: 2965 opt: 2965  Z-score: 3443.9  bits: 646.7 E(32554): 1.7e-185
Smith-Waterman score: 2965; 99.5% identity (99.5% similar) in 444 aa overlap (75-518:18-461)

           50        60        70        80        90       100    
pF1KE0 NYKLEFTALVVFSSLWELMVPFTRDYNTLQEALSNMDDYDKTCLGSALVGVCNIVQQEWG
                                     :::::::::::::: :::::::::::::::
CCDS55              MPTESLCRRTVSGDGHGEALSNMDDYDKTCLESALVGVCNIVQQEWG
                            10        20        30        40       

          110       120       130       140       150       160    
pF1KE0 GAIPCQVVLVTDGCLGIGRGSLRHSLATQNQRSESNRFPLPFPFPSKLYIMCMANLEELQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GAIPCQVVLVTDGCLGIGRGSLRHSLATQNQRSESNRFPLPFPFPSKLYIMCMANLEELQ
        50        60        70        80        90       100       

          170       180       190       200       210       220    
pF1KE0 STDSLECLERLIDLNNGEGQIFTIDGPLCLKNVQSMFGKLIGLAYTPFHAVLKCGHLTAD
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
CCDS55 STDSLECLERLIDLNNGEGQIFTIDGPLCLKNVQSMFGKLIDLAYTPFHAVLKCGHLTAD
       110       120       130       140       150       160       

          230       240       250       260       270       280    
pF1KE0 VQVFPRPEPFVVDEEIDPIPKVINTDLEIVGFIDIADISSPPVLSRHLVLPIALNKEGDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VQVFPRPEPFVVDEEIDPIPKVINTDLEIVGFIDIADISSPPVLSRHLVLPIALNKEGDE
       170       180       190       200       210       220       

          290       300       310       320       330       340    
pF1KE0 VGTGITDDNEDENSANQIAGKIPNFCVLLHGSLKVEGMVAIVQLGPEWHGMLYSQADSKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VGTGITDDNEDENSANQIAGKIPNFCVLLHGSLKVEGMVAIVQLGPEWHGMLYSQADSKK
       230       240       250       260       270       280       

          350       360       370       380       390       400    
pF1KE0 KSNLMMSLFEPGPEPLPWLGKMAQLGPISDAKENPYGEDDNKSPFPLQPKNKRSYAQNVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KSNLMMSLFEPGPEPLPWLGKMAQLGPISDAKENPYGEDDNKSPFPLQPKNKRSYAQNVT
       290       300       310       320       330       340       

          410       420       430       440       450       460    
pF1KE0 VWIKPSGLQTDVQKILRNARKLPEKTQTFYKELNRLRKAALAFGFLDLLKGVADMLEREC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VWIKPSGLQTDVQKILRNARKLPEKTQTFYKELNRLRKAALAFGFLDLLKGVADMLEREC
       350       360       370       380       390       400       

          470       480       490       500       510        
pF1KE0 TLLPETAHPDAAFQLTHAAQQLKLASTGTSEYAAYDQNITPLHTDFSGSSTERI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TLLPETAHPDAAFQLTHAAQQLKLASTGTSEYAAYDQNITPLHTDFSGSSTERI
       410       420       430       440       450       460 

>>CCDS45283.1 VWA9 gene_id:81556|Hs108|chr15              (439 aa)
 initn: 2937 init1: 2937 opt: 2937  Z-score: 3411.7  bits: 640.6 E(32554): 1e-183
Smith-Waterman score: 2937; 99.5% identity (99.5% similar) in 439 aa overlap (80-518:1-439)

      50        60        70        80        90       100         
pF1KE0 FTALVVFSSLWELMVPFTRDYNTLQEALSNMDDYDKTCLGSALVGVCNIVQQEWGGAIPC
                                     ::::::::: ::::::::::::::::::::
CCDS45                               MDDYDKTCLESALVGVCNIVQQEWGGAIPC
                                             10        20        30

     110       120       130       140       150       160         
pF1KE0 QVVLVTDGCLGIGRGSLRHSLATQNQRSESNRFPLPFPFPSKLYIMCMANLEELQSTDSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QVVLVTDGCLGIGRGSLRHSLATQNQRSESNRFPLPFPFPSKLYIMCMANLEELQSTDSL
               40        50        60        70        80        90

     170       180       190       200       210       220         
pF1KE0 ECLERLIDLNNGEGQIFTIDGPLCLKNVQSMFGKLIGLAYTPFHAVLKCGHLTADVQVFP
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS45 ECLERLIDLNNGEGQIFTIDGPLCLKNVQSMFGKLIDLAYTPFHAVLKCGHLTADVQVFP
              100       110       120       130       140       150

     230       240       250       260       270       280         
pF1KE0 RPEPFVVDEEIDPIPKVINTDLEIVGFIDIADISSPPVLSRHLVLPIALNKEGDEVGTGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RPEPFVVDEEIDPIPKVINTDLEIVGFIDIADISSPPVLSRHLVLPIALNKEGDEVGTGI
              160       170       180       190       200       210

     290       300       310       320       330       340         
pF1KE0 TDDNEDENSANQIAGKIPNFCVLLHGSLKVEGMVAIVQLGPEWHGMLYSQADSKKKSNLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TDDNEDENSANQIAGKIPNFCVLLHGSLKVEGMVAIVQLGPEWHGMLYSQADSKKKSNLM
              220       230       240       250       260       270

     350       360       370       380       390       400         
pF1KE0 MSLFEPGPEPLPWLGKMAQLGPISDAKENPYGEDDNKSPFPLQPKNKRSYAQNVTVWIKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSLFEPGPEPLPWLGKMAQLGPISDAKENPYGEDDNKSPFPLQPKNKRSYAQNVTVWIKP
              280       290       300       310       320       330

     410       420       430       440       450       460         
pF1KE0 SGLQTDVQKILRNARKLPEKTQTFYKELNRLRKAALAFGFLDLLKGVADMLERECTLLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SGLQTDVQKILRNARKLPEKTQTFYKELNRLRKAALAFGFLDLLKGVADMLERECTLLPE
              340       350       360       370       380       390

     470       480       490       500       510        
pF1KE0 TAHPDAAFQLTHAAQQLKLASTGTSEYAAYDQNITPLHTDFSGSSTERI
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TAHPDAAFQLTHAAQQLKLASTGTSEYAAYDQNITPLHTDFSGSSTERI
              400       410       420       430         




518 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:34:22 2016 done: Fri Nov  4 08:34:23 2016
 Total Scan time:  3.290 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]