FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0008, 697 aa
  1>>>pF1KE0008 697 - 697 aa - 697 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2951+/-0.0011; mu= 19.6005+/- 0.065
 mean_var=65.4157+/-13.503, 0's: 0 Z-trim(101.8): 32  B-trim: 0 in 0/48
 Lambda= 0.158574
 statistics sampled from 6681 (6684) to 6681 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.561), E-opt: 0.2 (0.205), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS5757.1 TMEM168 gene_id:64418|Hs108|chr7        ( 697) 4675 1079.1       0


>>CCDS5757.1 TMEM168 gene_id:64418|Hs108|chr7             (697 aa)
 initn: 4675 init1: 4675 opt: 4675  Z-score: 5775.4  bits: 1079.1 E(32554):    0
Smith-Waterman score: 4675; 99.6% identity (99.6% similar) in 697 aa overlap (1-697:1-697)

               10        20        30        40        50        60
pF1KE0 MCKSLCYCFSHCLYLAMTRLEEVNREVNMHSSVRYLGYLARINLLVAICLGLYVRWEKTA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MCKSLRYCFSHCLYLAMTRLEEVNREVNMHSSVRYLGYLARINLLVAICLGLYVRWEKTA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 NSLILVIFILGLFVLGIASILYYYFSMEAASLSLSNLWFGFLLGLLCFLDNSSFKNDVKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 NSLILVIFILGLFVLGIASILYYYFSMEAASLSLSNLWFGFLLGLLCFLDNSSFKNDVKE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 ESTKYLLLTSIVLRILCSLVERISGYVRHRPTLLTTVEFLELVGFAIASTTMLVEKSLSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 ESTKYLLLTSIVLRILCSLVERISGYVRHRPTLLTTVEFLELVGFAIASTTMLVEKSLSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ILLVVALAMLIIDLRMKSFLAIPNLVIFAVLLFFSSLETPKNPIAFACFFICLITDPFLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 ILLVVALAMLIIDLRMKSFLAIPNLVIFAVLLFFSSLETPKNPIAFACFFICLITDPFLD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 IYFSGLSVTERWKPFLYRGRICRRLSVVFAGMIELTFFILSAFKLRDTHLWYFVIPGFSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 IYFSGLSVTERWKPFLYRGRICRRLSVVFAGMIELTFFILSAFKLRDTHLWYFVIPGFSI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 FGIFRMICHIIFLLTLWGFHTKLNDCHKVYFTHRTDYNSLDRIMASKGMRHFCLISEQLV
       :::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 FGIFWMICHIIFLLTLWGFHTKLNDCHKVYFTHRTDYNSLDRIMASKGMRHFCLISEQLV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 FFSLLATAILGAVSWQPTNGIFLSMFLIVLPLESMAHGLFHELGNCLGGTSVGYAIVIPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 FFSLLATAILGAVSWQPTNGIFLSMFLIVLPLESMAHGLFHELGNCLGGTSVGYAIVIPT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 NFCSPDGQPTLLPPEHVQELNLRSTGMLNAIQRFFAYHMIETYGCDYSTSGLSFDTLHSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 NFCSPDGQPTLLPPEHVQELNLRSTGMLNAIQRFFAYHMIETYGCDYSTSGLSFDTLHSK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 LKAFLELRTVDGPRHDTYILYYSGHTHGTGEWALAGGDTLRLDTLIEWWREKNGSFCSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 LKAFLELRTVDGPRHDTYILYYSGHTHGTGEWALAGGDTLRLDTLIEWWREKNGSFCSRL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 IIVLDSENSTPWVKEVRKINDQYIAVQGAELIKTVDIEEADPPQLGDFTKDWVEYNCNSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
CCDS57 IIVLDSENSTPWVKEVRKINDQYIAVQGAELIKTVDIEEADPPQLGDFTKDWVEYNCNSS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 NNICWTEKGRTVKAVYGVSKRWSDYTLHLPTGSDVAKHWMLHFPRITYPLVHLANWLCGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 NNICWTEKGRTVKAVYGVSKRWSDYTLHLPTGSDVAKHWMLHFPRITYPLVHLANWLCGL
              610       620       630       640       650       660

              670       680       690       
pF1KE0 NLFWICKTCFRCLKRLKMSWFLPTVLDTGQGFKLVKS
       :::::::::::::::::::::::::::::::::::::
CCDS57 NLFWICKTCFRCLKRLKMSWFLPTVLDTGQGFKLVKS
              670       680       690       




697 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:08:50 2016 done: Sat Nov  5 22:08:50 2016
 Total Scan time:  3.050 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]