Result of FASTA (ccds) for
pF1KE0010
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0010, 770 aa
1>>>pF1KE0010 770 - 770 aa - 770 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.5083+/-0.00106; mu= -6.6664+/- 0.063
mean_var=365.7890+/-74.418, 0's: 0 Z-trim(114.5): 27 B-trim: 0 in 0/53
Lambda= 0.067059
statistics sampled from 15017 (15033) to 15017 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.462), width: 16
Scan time: 4.320
The best scores are: opt bits E(32554)
CCDS44613.1 PATL1 gene_id:219988|Hs108|chr11 ( 770) 5188 516.3 7.4e-146
CCDS45253.1 PATL2 gene_id:197135|Hs108|chr15 ( 543) 655 77.6 5.8e-14
CCDS81873.1 PATL2 gene_id:197135|Hs108|chr15 ( 354) 575 69.7 9e-12
>>CCDS44613.1 PATL1 gene_id:219988|Hs108|chr11 (770 aa)
initn: 5188 init1: 5188 opt: 5188 Z-score: 2732.1 bits: 516.3 E(32554): 7.4e-146
Smith-Waterman score: 5188; 99.9% identity (100.0% similar) in 770 aa overlap (1-770:1-770)
10 20 30 40 50 60
pF1KE0 MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PVAVNEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 IIGSPPVRAVPIGTPPKQMAVPSFTQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IIGSPPVRAVPIGTPPKQMAVPSFTQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCSV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 LQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 HRRLLHQRQQQNRSQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HRRLLHQRQQQNRSQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 RRYLLSLEEERPALMDDRKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RRYLLSLEEERPALMDDRKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLM
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 NLPQSAATPALSNPHLTAVLQNKFGLSLLLILLSRGEDLQSSDPATESTQNNQWTEVMFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NLPQSAATPALSNPHLTAVLQNKFGLSLLLILLSRGEDLQSSDPATESTQNNQWTEVMFM
670 680 690 700 710 720
730 740 750 760 770
pF1KE0 ATRELLRIPQAALARPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS44 ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
730 740 750 760 770
>>CCDS45253.1 PATL2 gene_id:197135|Hs108|chr15 (543 aa)
initn: 843 init1: 381 opt: 655 Z-score: 364.1 bits: 77.6 E(32554): 5.8e-14
Smith-Waterman score: 944; 34.0% identity (65.5% similar) in 527 aa overlap (246-765:46-539)
220 230 240 250 260 270
pF1KE0 VRPPMPPRYPAPYGERMSPNQLCSVPNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPG
: . :.. . : .::...
CCDS45 SEEELVSACQLEKEEENEGEEEEEEEDEEDLDPDLDPDLEEEENDLGDPAVLGAVHNTQR
20 30 40 50 60 70
280 290 300 310 320 330
pF1KE0 RMSPSQFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPSATPPPQQH-P-
. : ...::..: ::... . .. ..: : : :. . ::.. : :. :
CCDS45 ALLSSPGVKAPGMLGMSLASLH---FLWQTLDYLSPIP----FWPTFPSTSSPAQHFGPR
80 90 100 110 120
340 350 360 370 380 390
pF1KE0 -PGPGPHL--QNLRSQAPMFRPDTTHLHPQHRRLLHQRQQQNRSQHRNLNGAGDRGSHRS
:.: : : . : : : : :.:::.:.:.: :::..:: : .
CCDS45 LPSPDPTLFCSLLTSWPPRFS-HLTQLHPRHQRIL---QQQQHSQ---------TPSPPA
130 140 150 160 170
400 410 420 430 440 450
pF1KE0 SHQDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQNYFEKLEKLSAAEEIQ
.. . ::::::: ..::::: :.::.::::. : :::.:::.:..:::: .: ::.
CCDS45 KKPWSQQPDPYANLMTRKEKDWVIKVQMVQLQSAKPRLDDYYYQEYYQKLEKKQADEELL
180 190 200 210 220 230
460 470 480 490 500 510
pF1KE0 GDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPRKMIDAVVTSRSEDDET
: . : ::.:: . : : . :..:::::...::. .::. :::: . .:.:
CCDS45 GRRNRVESLKLVTPYIPKAEAYESVVRIEGSLGQVAVSTCFSPRRAIDAVPHGTQEQDI-
240 250 260 270 280 290
520 530 540 550 560 570
pF1KE0 KEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALMDDRKHKICSMYDNLR
. . ..: ..: ::: . ::..:. . . : . ....... .....:.
CCDS45 --EAASSQRLRVLYRIEKMFLQLLEIEEGWKY-----RPPPPCFSEQQSNQVEKLFQTLK
300 310 320 330 340
580 590 600 610 620 630
pF1KE0 GKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQD
. .. . . : :.:.. .:::: .:::.:::: .::. ::.. ...::.:...:. :
CCDS45 TQEQNNLEEAADGFLQVLSVRKGKALVARLLPFLPQDQAVTILLAITHHLPLLVRRDVAD
350 360 370 380 390 400
640 650 660 670 680 690
pF1KE0 EVLPCLLSPFSLLLYHLPSVSITSLLRQLMNLPQSAATPALSNPHLTAVLQNKFGLSLLL
..: :..:.. . :: .. ::. :..: . :. :. .:.::::.::.:::
CCDS45 QALQMLFKPLGKCISHL---TLHELLQGLQGL--TLLPPGSSERPVTVVLQNQFGISLLY
410 420 430 440 450 460
700 710 720 730 740
pF1KE0 ILLSRGEDLQSSDPATE--STQNNQWTEVMFMATRELLRIPQAALARPISIPTNLVSLFS
:::.::.: : . : ..... ::... . . :. ..: :.::.:...:.::. ::
CCDS45 ALLSHGEQLVSLHSSLEEPNSDHTAWTDMVVLIAWEIAQMPTASLAEPLAFPSNLLPLFC
470 480 490 500 510 520
750 760 770
pF1KE0 RYVDRQKLNLLETKLQLVQGIR
..::.: .. ::.....
CCDS45 HHVDKQLVQQLEARMEFAWIY
530 540
>>CCDS81873.1 PATL2 gene_id:197135|Hs108|chr15 (354 aa)
initn: 744 init1: 338 opt: 575 Z-score: 324.8 bits: 69.7 E(32554): 9e-12
Smith-Waterman score: 794; 36.4% identity (71.3% similar) in 363 aa overlap (405-765:1-350)
380 390 400 410 420 430
pF1KE0 QHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQ
: ..::::: :.::.::::. : :::.:::
CCDS81 MTRKEKDWVIKVQMVQLQSAKPRLDDYYYQ
10 20 30
440 450 460 470 480 490
pF1KE0 NYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPR
.:..:::: .: ::. : . : ::.:: . : : . :..:::::...::. .::
CCDS81 EYYQKLEKKQADEELLGRRNRVESLKLVTPYIPKAEAYESVVRIEGSLGQVAVSTCFSPR
40 50 60 70 80 90
500 510 520 530 540 550
pF1KE0 KMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPAL
. :::: . .:.: . . ..: ..: ::: . ::..:. . . : .
CCDS81 RAIDAVPHGTQEQDI---EAASSQRLRVLYRIEKMFLQLLEIEEGWKY-----RPPPPCF
100 110 120 130 140
560 570 580 590 600 610
pF1KE0 MDDRKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILM
....... .....:. . .. . . : :.:.. .:::: .:::.:::: .::. ::.
CCDS81 SEQQSNQVEKLFQTLKTQEQNNLEEAADGFLQVLSVRKGKALVARLLPFLPQDQAVTILL
150 160 170 180 190 200
620 630 640 650 660 670
pF1KE0 TTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLMNLPQSAATPALSNP
. ...::.:...:. :..: :..:.. . :: .. ::. :..: . :. :.
CCDS81 AITHHLPLLVRRDVADQALQMLFKPLGKCISHL---TLHELLQGLQGL--TLLPPGSSER
210 220 230 240 250
680 690 700 710 720 730
pF1KE0 HLTAVLQNKFGLSLLLILLSRGEDLQSSDPATE--STQNNQWTEVMFMATRELLRIPQAA
.:.::::.::.::: :::.::.: : . : ..... ::... . . :. ..: :.
CCDS81 PVTVVLQNQFGISLLYALLSHGEQLVSLHSSLEEPNSDHTAWTDMVVLIAWEIAQMPTAS
260 270 280 290 300 310
740 750 760 770
pF1KE0 LARPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
::.:...:.::. :: ..::.: .. ::.....
CCDS81 LAEPLAFPSNLLPLFCHHVDKQLVQQLEARMEFAWIY
320 330 340 350
770 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:28:22 2016 done: Fri Nov 4 08:28:22 2016
Total Scan time: 4.320 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]