FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0012, 521 aa
  1>>>pF1KE0012 521 - 521 aa - 521 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3273+/-0.000995; mu= 18.3025+/- 0.060
 mean_var=67.6007+/-13.416, 0's: 0 Z-trim(104.1): 35  B-trim: 0 in 0/52
 Lambda= 0.155991
 statistics sampled from 7686 (7711) to 7686 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.237), width:  16
 Scan time:  3.200

The best scores are:                                      opt bits E(32554)
CCDS5000.2 CYB5R4 gene_id:51167|Hs108|chr6         ( 521) 3474 791.2       0


>>CCDS5000.2 CYB5R4 gene_id:51167|Hs108|chr6              (521 aa)
 initn: 3474 init1: 3474 opt: 3474  Z-score: 4223.7  bits: 791.2 E(32554):    0
Smith-Waterman score: 3474; 99.8% identity (100.0% similar) in 521 aa overlap (1-521:1-521)

               10        20        30        40        50        60
pF1KE0 MLNVPSQSFPAPRSQQRVASGGRSKVPLKQGRSLMDWIRLTKSGKDLTGLKGRLIEVTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MLNVPSQSFPAPRSQQRVASGGRSKVPLKQGRSLMDWIRLTKSGKDLTGLKGRLIEVTEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSNGTELFDQVHRWVNYESM
       ::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS50 ELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LKECLVGRMAIKPAVLKDYREEEKKVLNGMLPKSQVTDTLAKEGPSYPSYDWFQTDSLVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 LKECLVGRMAIKPAVLKDYREEEKKVLNGMLPKSQVTDTLAKEGPSYPSYDWFQTDSLVT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 IAIYTKQKDINLDSIIVDHQNDSFRAETIIKDCLYLIHIGLSHEVQEDFSVRVVESVGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 IAIYTKQKDINLDSIIVDHQNDSFRAETIIKDCLYLIHIGLSHEVQEDFSVRVVESVGKI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EIVLQKKENTSWDFLGHPLKNHNSLIPRKDTGLYYRKCQLISKEDVTHDTRLFCLMLPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 EIVLQKKENTSWDFLGHPLKNHNSLIPRKDTGLYYRKCQLISKEDVTHDTRLFCLMLPPS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 THLQVPIGQHVYLKLPITGTEIVKPYTPVSGSLLSEFKEPVLPNNKYIYFLIKIYPTGLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 THLQVPIGQHVYLKLPITGTEIVKPYTPVSGSLLSEFKEPVLPNNKYIYFLIKIYPTGLF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 TPELDRLQIGDFVSVSSPEGNFKISKFQELEDLFLLAAGTGFTPMVKILNYALTDIPSLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 TPELDRLQIGDFVSVSSPEGNFKISKFQELEDLFLLAAGTGFTPMVKILNYALTDIPSLR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 KVKLMFFNKTEDDIIWRSQLEKLAFKDKRLDVEFVLSAPISEWNGKQGHISPALLSEFLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 KVKLMFFNKTEDDIIWRSQLEKLAFKDKRLDVEFVLSAPISEWNGKQGHISPALLSEFLK
              430       440       450       460       470       480

              490       500       510       520 
pF1KE0 RNLDKSKVLVCICGPVPFTEQGVRLLHDLNFSKNEIHSFTA
       :::::::::::::::::::::::::::::::::::::::::
CCDS50 RNLDKSKVLVCICGPVPFTEQGVRLLHDLNFSKNEIHSFTA
              490       500       510       520 




521 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:24:50 2016 done: Fri Nov  4 08:24:50 2016
 Total Scan time:  3.200 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]