FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0019, 592 aa
  1>>>pF1KE0019 592 - 592 aa - 592 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0600+/-0.00106; mu= 16.9725+/- 0.064
 mean_var=139.8420+/-29.067, 0's: 0 Z-trim(108.2): 81  B-trim: 2 in 1/50
 Lambda= 0.108456
 statistics sampled from 9966 (10038) to 9966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.308), width:  16
 Scan time:  3.400

The best scores are:                                      opt bits E(32554)
CCDS47219.1 RNF180 gene_id:285671|Hs108|chr5       ( 592) 4112 655.6 4.9e-188
CCDS34169.1 RNF180 gene_id:285671|Hs108|chr5       ( 416) 2770 445.5 6.3e-125


>>CCDS47219.1 RNF180 gene_id:285671|Hs108|chr5            (592 aa)
 initn: 4112 init1: 4112 opt: 4112  Z-score: 3489.3  bits: 655.6 E(32554): 4.9e-188
Smith-Waterman score: 4112; 99.8% identity (99.8% similar) in 592 aa overlap (1-592:1-592)

               10        20        30        40        50        60
pF1KE0 MKRSKELITKNHSQGETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVW
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MKRSKELITKNHSQEETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HMNVEALPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 HMNVEALPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DYQPTQAGRLMRPSVKYLSHPRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DYQPTQAGRLMRPSVKYLSHPRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ALCLEVRPTYFEMKNEKLLSKASEPKYQLFVPQLVTGRCATRAFHRKSHSLDLNISEKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ALCLEVRPTYFEMKNEKLLSKASEPKYQLFVPQLVTGRCATRAFHRKSHSLDLNISEKLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSFQNPSSFDPSMLLQRFSVAPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSFQNPSSFDPSMLLQRFSVAPH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEEHLSPLDFLHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEEHLSPLDFLHS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 ANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHMTLNNEMSTDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHMTLNNEMSTDED
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 NEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 NEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 FFQTELNNATKTFFTKEYLKIKQSFQKSNSAKWPLPSCRKAFHLFGGFRRHAAPVTRRQF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FFQTELNNATKTFFTKEYLKIKQSFQKSNSAKWPLPSCRKAFHLFGGFRRHAAPVTRRQF
              490       500       510       520       530       540

              550       560       570       580       590  
pF1KE0 PHGAHRMDYLHFEDDSRGWWFDMDMVIIYIYSVNWVIGFIVFCFLCYFFFPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PHGAHRMDYLHFEDDSRGWWFDMDMVIIYIYSVNWVIGFIVFCFLCYFFFPF
              550       560       570       580       590  

>>CCDS34169.1 RNF180 gene_id:285671|Hs108|chr5            (416 aa)
 initn: 2770 init1: 2770 opt: 2770  Z-score: 2356.3  bits: 445.5 E(32554): 6.3e-125
Smith-Waterman score: 2770; 99.8% identity (99.8% similar) in 409 aa overlap (1-409:1-409)

               10        20        30        40        50        60
pF1KE0 MKRSKELITKNHSQGETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVW
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKRSKELITKNHSQEETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HMNVEALPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HMNVEALPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DYQPTQAGRLMRPSVKYLSHPRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DYQPTQAGRLMRPSVKYLSHPRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 ALCLEVRPTYFEMKNEKLLSKASEPKYQLFVPQLVTGRCATRAFHRKSHSLDLNISEKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ALCLEVRPTYFEMKNEKLLSKASEPKYQLFVPQLVTGRCATRAFHRKSHSLDLNISEKLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSFQNPSSFDPSMLLQRFSVAPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSFQNPSSFDPSMLLQRFSVAPH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEEHLSPLDFLHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEEHLSPLDFLHS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 ANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHMTLNNEMSTDED
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS34 ANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHMVSIYLLI    
              370       380       390       400       410          

              430       440       450       460       470       480
pF1KE0 NEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRV




592 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:18:23 2016 done: Fri Nov  4 08:18:24 2016
 Total Scan time:  3.400 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]