FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0029, 530 aa
  1>>>pF1KE0029 530 - 530 aa - 530 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3981+/-0.000993; mu= 13.5730+/- 0.060
 mean_var=89.7108+/-17.507, 0's: 0 Z-trim(106.0): 22  B-trim: 0 in 0/50
 Lambda= 0.135410
 statistics sampled from 8709 (8718) to 8709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.268), width:  16
 Scan time:  3.360

The best scores are:                                      opt bits E(32554)
CCDS2335.1 FAM126B gene_id:285172|Hs108|chr2       ( 530) 3441 682.6 3.1e-196
CCDS5377.1 FAM126A gene_id:84668|Hs108|chr7        ( 521) 1719 346.2 5.6e-95


>>CCDS2335.1 FAM126B gene_id:285172|Hs108|chr2            (530 aa)
 initn: 3441 init1: 3441 opt: 3441  Z-score: 3636.5  bits: 682.6 E(32554): 3.1e-196
Smith-Waterman score: 3441; 100.0% identity (100.0% similar) in 530 aa overlap (1-530:1-530)

               10        20        30        40        50        60
pF1KE0 MLGTDRCVVEEWLSEFKALPDTQITSYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MLGTDRCVVEEWLSEFKALPDTQITSYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 FELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 KVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKHWKELCGRIVLDPEFMVQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKHWKELCGRIVLDPEFMVQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSTQEGQKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSTQEGQKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LKVEVTPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 LKVEVTPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 PIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 PIGTKPSSSSQRGSLRKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPTDLSVDSV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 ELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQASTSIGVGTEGGTNLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNGSQASTSIGVGTEGGTNLA
              430       440       450       460       470       480

              490       500       510       520       530
pF1KE0 ANNANRYSTVSLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 ANNANRYSTVSLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQV
              490       500       510       520       530

>>CCDS5377.1 FAM126A gene_id:84668|Hs108|chr7             (521 aa)
 initn: 1617 init1: 1539 opt: 1719  Z-score: 1818.6  bits: 346.2 E(32554): 5.6e-95
Smith-Waterman score: 1719; 52.1% identity (78.2% similar) in 537 aa overlap (1-526:1-518)

               10        20        30        40        50        60
pF1KE0 MLGTDRCVVEEWLSEFKALPDTQITSYAATLHRKKTLVPALYKVIQDSNNELLEPVCHQL
       :. ... ::::::::::.::.:.. .::..:. :..:: .::::::. ..::::::::::
CCDS53 MFTSEKGVVEEWLSEFKTLPETSLPNYATNLKDKSSLVSSLYKVIQEPQSELLEPVCHQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 FELYRSSEVRLKRFTLQFLPELMWVYLRLTVSRDRQSNGCIEALLLGIYNLEIADKDGNN
       ::.:::.: .: .:::::::::.: :: ...::. .:.:::::::::.:::::.::.:..
CCDS53 FEFYRSGEEQLLQFTLQFLPELIWCYLAVSASRNVHSSGCIEALLLGVYNLEIVDKQGHT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KVLSFTIPSLSKPSIYHEPSTIGSMALTEGALCQHDLIRVVYSDLHPQRETFTAQNRFEV
       ::::::::::::::.:::::.::::::::.:: :: : .::::  ::::: .::::::::
CCDS53 KVLSFTIPSLSKPSVYHEPSSIGSMALTESALSQHGLSKVVYSGPHPQREMLTAQNRFEV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 LSFLMLCYNSAIVYMPASSYQSLCRMGSRVCVSGFPRQHEKHWKELCGRIVLDPEFMVQL
       :.::.::::.:..:::. : ::::.. ::.:: :.:::: ...: . .:: ..  ::::.
CCDS53 LTFLLLCYNAALTYMPSVSLQSLCQICSRICVCGYPRQHVRKYKGISSRIPVSSGFMVQM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LTGVYYAMYNGQWDLGQEVLDDIIYRAQLELFSQPLLVANAMKNSLPFDAPDSTQEGQKV
       :::.:.:.:::.:::.:..::::::::::::. .:::::::.: :::     :..:: . 
CCDS53 LTGIYFAFYNGEWDLAQKALDDIIYRAQLELYPEPLLVANAIKASLPHGPMKSNKEGTRC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LKVEVTPTVPRISRTAITTASIRRHRWRREGAEGVNGGEESVNLNDADEGFSSGASLSSQ
       ..::.:::  ::::.:.:. ::: :::.:.:   ..: :: ......:::: : :. :..
CCDS53 IQVEITPTSSRISRNAVTSMSIRGHRWKRHGNTELTGQEELMEISEVDEGFYSRAASSTS
              310       320       330       340       350       360

                370            380       390       400       410   
pF1KE0 PIGTKPSSS--SQRGSL-----RKVATGRSAKDKETASAIKSSESPRDSVVRKQYVQQPT
         : . ::   :.. :.     :. ..  ..:.:::     ..:: .:  .::: .:.  
CCDS53 QSGLSNSSHNCSNKPSIGKNHRRSGGSKTGGKEKET-----TGESCKDHFARKQ-TQRAQ
              370       380       390            400        410    

           420       430       440       450       460             
pF1KE0 DLSVDSVELTPMKKHLSLPAGQVVPKINSLSLIRTASASSSKSFDYVNG----SQASTSI
       .   ...::  .:. :.: ..: .:: .: .: .::..  ::::. :.:     . :...
CCDS53 S---ENLELLSLKR-LTLTTSQSLPKPSSHGLAKTAATVFSKSFEQVSGVTVPHNPSSAV
             420        430       440       450       460       470

     470       480       490       500       510       520         
pF1KE0 GVGTEGGTNLAANNANRYSTVSLQEDRLGQAGEGKELLSPGAPLTKQSRSPSFNMQLISQ
       : :       :...:::.:. ::::..:  ..:  ::  :    . :.: ::... :   
CCDS53 GCG-------AGTDANRFSACSLQEEKLIYVSERTEL--PMKHQSGQQRPPSISITLSTD
                     480       490       500         510       520 

     530
pF1KE0 V




530 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:31:18 2016 done: Fri Nov  4 07:31:19 2016
 Total Scan time:  3.360 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]