FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0040, 636 aa
  1>>>pF1KE0040 636 - 636 aa - 636 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7088+/-0.000819; mu= 18.0556+/- 0.050
 mean_var=78.2643+/-15.406, 0's: 0 Z-trim(108.4): 20  B-trim: 0 in 0/51
 Lambda= 0.144975
 statistics sampled from 10193 (10201) to 10193 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.313), width:  16
 Scan time:  3.790

The best scores are:                                      opt bits E(32554)
CCDS4846.1 MOCS1 gene_id:4337|Hs108|chr6           ( 385) 2551 543.1 2.6e-154
CCDS43460.1 MOCS1 gene_id:4337|Hs108|chr6          ( 385) 2282 486.8 2.3e-137


>>CCDS4846.1 MOCS1 gene_id:4337|Hs108|chr6                (385 aa)
 initn: 2551 init1: 2551 opt: 2551  Z-score: 2883.8  bits: 543.1 E(32554): 2.6e-154
Smith-Waterman score: 2551; 100.0% identity (100.0% similar) in 383 aa overlap (1-383:1-383)

               10        20        30        40        50        60
pF1KE0 MWKSWKLRTDVRVREGAGGSPCASSQPGSRGPCFLPGLSSQEVSRRRQFLREHAAPFSAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MWKSWKLRTDVRVREGAGGSPCASSQPGSRGPCFLPGLSSQEVSRRRQFLREHAAPFSAF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LTDSFGRQHSYLRISLTEKCNLRCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LTDSFGRQHSYLRISLTEKCNLRCQYCMPEEGVPLTPKANLLTTEEILTLARLFVKEGID
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KIRLTGGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNGINLARLLPQLQKAGLSAINISLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 KIRLTGGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNGINLARLLPQLQKAGLSAINISLD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 TLVPAKFEFIVRRKGFHKVMEGIHKAIELGYNPVKVNCVVMRGLNEDELLDFAALTEGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TLVPAKFEFIVRRKGFHKVMEGIHKAIELGYNPVKVNCVVMRGLNEDELLDFAALTEGLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LDVRFIEYMPFDGNKWNFKKMVSYKEMLDTVRQQWPELEKVPEEESSTAKAFKIPGFQGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LDVRFIEYMPFDGNKWNFKKMVSYKEMLDTVRQQWPELEKVPEEESSTAKAFKIPGFQGQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 ISFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLRDHLRAGASEQELLRIIGAAVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 ISFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLRDHLRAGASEQELLRIIGAAVG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 RKKRQHAGMFSISQMKNRPMILIELFLMFPNSPPANPSIFSWDPLHVQGLRPRMSFSSQV
       :::::::::::::::::::::::                                     
CCDS48 RKKRQHAGMFSISQMKNRPMILIGG                                   
              370       380                                        

>>CCDS43460.1 MOCS1 gene_id:4337|Hs108|chr6               (385 aa)
 initn: 2257 init1: 2257 opt: 2282  Z-score: 2579.7  bits: 486.8 E(32554): 2.3e-137
Smith-Waterman score: 2282; 95.9% identity (97.3% similar) in 366 aa overlap (22-383:21-383)

               10        20        30            40        50      
pF1KE0 MWKSWKLRTDVRVREGAGGSPCASSQPGSRGPCFLPGLS----SQEVSRRRQFLREHAAP
                            :.:. : .. ::  :: :    :.:::::::::::::::
CCDS43  MAARPLSRMLRRLLRSSARSCSSGAPVTQ-PC--PGESARAASEEVSRRRQFLREHAAP
                10        20         30          40        50      

         60        70        80        90       100       110      
pF1KE0 FSAFLTDSFGRQHSYLRISLTEKCNLRCQYCMPEEGVPLTPKANLLTTEEILTLARLFVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FSAFLTDSFGRQHSYLRISLTEKCNLRCQYCMPEEGVPLTPKANLLTTEEILTLARLFVK
         60        70        80        90       100       110      

        120       130       140       150       160       170      
pF1KE0 EGIDKIRLTGGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNGINLARLLPQLQKAGLSAIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EGIDKIRLTGGEPLIRPDVVDIVAQLQRLEGLRTIGVTTNGINLARLLPQLQKAGLSAIN
        120       130       140       150       160       170      

        180       190       200       210       220       230      
pF1KE0 ISLDTLVPAKFEFIVRRKGFHKVMEGIHKAIELGYNPVKVNCVVMRGLNEDELLDFAALT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ISLDTLVPAKFEFIVRRKGFHKVMEGIHKAIELGYNPVKVNCVVMRGLNEDELLDFAALT
        180       190       200       210       220       230      

        240       250       260       270       280       290      
pF1KE0 EGLPLDVRFIEYMPFDGNKWNFKKMVSYKEMLDTVRQQWPELEKVPEEESSTAKAFKIPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EGLPLDVRFIEYMPFDGNKWNFKKMVSYKEMLDTVRQQWPELEKVPEEESSTAKAFKIPG
        240       250       260       270       280       290      

        300       310       320       330       340       350      
pF1KE0 FQGQISFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLRDHLRAGASEQELLRIIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FQGQISFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLRDHLRAGASEQELLRIIG
        300       310       320       330       340       350      

        360       370       380       390       400       410      
pF1KE0 AAVGRKKRQHAGMFSISQMKNRPMILIELFLMFPNSPPANPSIFSWDPLHVQGLRPRMSF
       :::::::::::::::::::::::::::                                 
CCDS43 AAVGRKKRQHAGMFSISQMKNRPMILIGG                               
        360       370       380                                    




636 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:29:25 2016 done: Fri Nov  4 06:29:26 2016
 Total Scan time:  3.790 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]