Result of FASTA (ccds) for
pF1KE0048
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0048, 522 aa
1>>>pF1KE0048 522 - 522 aa - 522 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9580+/-0.000884; mu= 8.2283+/- 0.054
mean_var=176.2150+/-34.948, 0's: 0 Z-trim(112.8): 32 B-trim: 0 in 0/53
Lambda= 0.096617
statistics sampled from 13443 (13468) to 13443 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.414), width: 16
Scan time: 3.730
The best scores are: opt bits E(32554)
CCDS3738.1 LARP1B gene_id:55132|Hs108|chr4 ( 914) 3449 493.0 6e-139
CCDS64057.1 LARP1B gene_id:55132|Hs108|chr4 ( 335) 2253 326.0 4.3e-89
CCDS47133.1 LARP1B gene_id:55132|Hs108|chr4 ( 358) 2253 326.0 4.5e-89
CCDS4328.1 LARP1 gene_id:23367|Hs108|chr5 (1019) 1560 229.7 1.2e-59
>>CCDS3738.1 LARP1B gene_id:55132|Hs108|chr4 (914 aa)
initn: 3449 init1: 3449 opt: 3449 Z-score: 2608.0 bits: 493.0 E(32554): 6e-139
Smith-Waterman score: 3449; 100.0% identity (100.0% similar) in 508 aa overlap (1-508:1-508)
10 20 30 40 50 60
pF1KE0 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGSPLSPKKNSETSILQAMSRGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGSPLSPKKNSETSILQAMSRGL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 STSLPDLDSEPWIEVKKRHQPAPVKLRESVSVPEGSLNQLCSSEEPEQEELDFLFDEEIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 STSLPDLDSEPWIEVKKRHQPAPVKLRESVSVPEGSLNQLCSSEEPEQEELDFLFDEEIE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 QIGRKNTFTDWSDNDSDYEIDDQDLNKILIVTQTPPYVKKHPGGDRTGTHMSRAKITSEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 QIGRKNTFTDWSDNDSDYEIDDQDLNKILIVTQTPPYVKKHPGGDRTGTHMSRAKITSEL
430 440 450 460 470 480
490 500 510 520
pF1KE0 AKVINDGLYYYEQDLWMEEDENKHTAIKVIVSGQHLSTDALF
::::::::::::::::::::::::::::
CCDS37 AKVINDGLYYYEQDLWMEEDENKHTAIKQEVENFKKLNLISKEQFENLTPELPFEPNQEV
490 500 510 520 530 540
>>CCDS64057.1 LARP1B gene_id:55132|Hs108|chr4 (335 aa)
initn: 2253 init1: 2253 opt: 2253 Z-score: 1713.1 bits: 326.0 E(32554): 4.3e-89
Smith-Waterman score: 2253; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)
10 20 30 40 50 60
pF1KE0 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGSPLSPKKNSETSILQAMSRGL
:::::::::::::::::::::::::::::
CCDS64 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTVRVMIF
310 320 330
>>CCDS47133.1 LARP1B gene_id:55132|Hs108|chr4 (358 aa)
initn: 2253 init1: 2253 opt: 2253 Z-score: 1712.7 bits: 326.0 E(32554): 4.5e-89
Smith-Waterman score: 2253; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329)
10 20 30 40 50 60
pF1KE0 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MENWPTPSELVNTGFQSVLSQGNKKPQNRKEKEEKVEKRSNSDSKENRETKLNGPGENVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EDEAQSSNQRKRANKHKWVPLHLDVVRSESQERPGSRNSSRCQPEANKPTHNNRRNDTRS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 WKRDREKRDDQDDVSSVRSEGGNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KMDEQGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTESAPNSPRIGSPLSPKKNSETSILQAMSRGL
:::::::::::::::::::::::::::::
CCDS47 PPRSVPPTDFSQLIDCPEFVPGQAFCSHTGNIFSSRANDVTVGYLVQFTYLFIYFQFI
310 320 330 340 350
>>CCDS4328.1 LARP1 gene_id:23367|Hs108|chr5 (1019 aa)
initn: 1368 init1: 484 opt: 1560 Z-score: 1184.3 bits: 229.7 E(32554): 1.2e-59
Smith-Waterman score: 1739; 52.6% identity (76.8% similar) in 534 aa overlap (3-508:98-626)
10 20 30
pF1KE0 MENWPTPSELVNTGFQ--SVLSQGNKKPQNRK
:::::.:... . : : : ..: .:
CCDS43 PEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKK
70 80 90 100 110 120
40 50 60 70 80
pF1KE0 EKEEKVEKRSNSDSKENRETKLNGPGENVSEDE-AQSSNQRKRANKHKWVPLHLDVVRSE
. .:. :: .:::::. .:: . ::. . :: : ..:.:..::::::::..:.
CCDS43 DMKEQ-EKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEV
130 140 150 160 170 180
90 100 110 120 130
pF1KE0 SQERPGSRNSSRCQPE---ANKPTHNNRRNDTR--------SWK---RDREKRDDQDDVS
.:. .:: . .:. ::. .. .. : .:. . . :::..:
CCDS43 PREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETS
190 200 210 220 230 240
140 150 160 170 180 190
pF1KE0 SVRSEG-GNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHGERTDQPFQTELNTS
::.:.: :. :.::::::::::::::::::. : .:::..::.. . .. : . ..
CCDS43 SVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKF-DGVEGPRTPKYMNN
250 260 270 280 290 300
200 210 220 230 240 250
pF1KE0 MMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIA
. ::.:. .....: :.. :::.::::::::::::.::::::::: ::: .:::::.:::
CCDS43 ITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIA
310 320 330 340 350 360
260 270 280 290 300 310
pF1KE0 GFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQLI
.:.:::::::...::. ::::: :::::::.:.. ::::::.: : . ::::::.
CCDS43 SFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLP--PIVDYSQTDFSQLL
370 380 390 400 410 420
320 330 340 350 360 370
pF1KE0 DCPEFVPGQAFCSHTESAPNSPRIGSPLSPKKNSETSILQAMSRGLSTSLPDLDSEPWIE
.:::::: : . ..:::::.::: .:. : :. :.: :... .:::.:::::::: :::
CCDS43 NCPEFVPRQHYQKETESAPGSPRAVTPV-PTKTEEVSNLKTLPKGLSASLPDLDSENWIE
430 440 450 460 470 480
380 390 400 410 420
pF1KE0 VKKRHQPAPVKLRES--------VSVPEG-SLNQLCSSEEPEQEELDFLFDEEIEQI-GR
:::: .:.:.. ..: .:.:. .:: :... ::::::::::::.::. ::
CCDS43 VKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMDGR
490 500 510 520 530 540
430 440 450 460 470 480
pF1KE0 KNTFTDWSDNDSDYEIDDQDLNKILIVTQTPPYVKKHPGGDRTGTHMSRAKITSELAKVI
::::: :::..:::::::.:.:::::::::: :...::::::::.: ::::...::::::
CCDS43 KNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAKVI
550 560 570 580 590 600
490 500 510 520
pF1KE0 NDGLYYYEQDLWMEEDENKHTAIKVIVSGQHLSTDALF
::::.::::::: :. : ... ::
CCDS43 NDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGP
610 620 630 640 650 660
522 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:08:00 2016 done: Fri Nov 4 06:08:01 2016
Total Scan time: 3.730 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]