Result of FASTA (omim) for
pF1KE0061
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0061, 937 aa
1>>>pF1KE0061 937 - 937 aa - 937 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6970+/-0.000438; mu= 10.7230+/- 0.027
mean_var=157.4435+/-32.182, 0's: 0 Z-trim(115.9): 407 B-trim: 450 in 1/52
Lambda= 0.102214
statistics sampled from 26247 (26660) to 26247 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.313), width: 16
Scan time: 14.330
The best scores are: opt bits E(85289)
NP_061733 (OMIM: 606313) protocadherin alpha-7 iso ( 937) 6164 921.9 0
NP_114040 (OMIM: 606313) protocadherin alpha-7 iso ( 789) 5119 767.7 0
NP_061731 (OMIM: 606311) protocadherin alpha-5 iso ( 936) 5007 751.3 5.3e-216
NP_061726 (OMIM: 606318) protocadherin alpha-12 is ( 941) 4884 733.1 1.5e-210
NP_114063 (OMIM: 606315) protocadherin alpha-9 iso ( 950) 4505 677.2 1e-193
NP_054724 (OMIM: 606315) protocadherin alpha-9 iso ( 842) 4486 674.4 6.5e-193
NP_061730 (OMIM: 606310) protocadherin alpha-4 iso ( 947) 4239 638.0 6.6e-182
NP_113688 (OMIM: 606310) protocadherin alpha-4 iso ( 798) 4220 635.2 4e-181
NP_061729 (OMIM: 606309) protocadherin alpha-3 iso ( 950) 4100 617.5 9.8e-176
NP_113685 (OMIM: 606309) protocadherin alpha-3 iso ( 824) 4076 613.9 1e-174
NP_061727 (OMIM: 606319) protocadherin alpha-13 is ( 950) 4015 605.0 5.8e-172
NP_061723 (OMIM: 606307) protocadherin alpha-1 iso ( 950) 3991 601.4 6.7e-171
NP_061732 (OMIM: 606312) protocadherin alpha-6 iso ( 950) 3989 601.1 8.3e-171
NP_114071 (OMIM: 606319) protocadherin alpha-13 is ( 807) 3987 600.8 8.9e-171
NP_114036 (OMIM: 606312) protocadherin alpha-6 iso ( 803) 3971 598.4 4.6e-170
NP_113598 (OMIM: 606307) protocadherin alpha-1 iso ( 807) 3967 597.9 6.9e-170
NP_113689 (OMIM: 606311) protocadherin alpha-5 iso ( 816) 3962 597.1 1.2e-169
NP_061734 (OMIM: 606314) protocadherin alpha-8 iso ( 950) 3956 596.3 2.4e-169
NP_114062 (OMIM: 606314) protocadherin alpha-8 iso ( 814) 3940 593.9 1.1e-168
NP_061728 (OMIM: 606308) protocadherin alpha-2 iso ( 948) 3939 593.8 1.4e-168
NP_113683 (OMIM: 606308) protocadherin alpha-2 iso ( 824) 3931 592.5 2.8e-168
NP_061725 (OMIM: 606317) protocadherin alpha-11 is ( 949) 3929 592.3 3.8e-168
NP_113684 (OMIM: 606308) protocadherin alpha-2 iso ( 808) 3927 592.0 4.1e-168
NP_061724 (OMIM: 606316) protocadherin alpha-10 is ( 948) 3911 589.6 2.4e-167
NP_114067 (OMIM: 606317) protocadherin alpha-11 is ( 810) 3909 589.3 2.6e-167
NP_114065 (OMIM: 606316) protocadherin alpha-10 is ( 844) 3901 588.1 6.1e-167
NP_114070 (OMIM: 606318) protocadherin alpha-12 is ( 792) 3867 583.1 1.9e-165
NP_113599 (OMIM: 606307) protocadherin alpha-1 iso ( 686) 2584 393.9 1.5e-108
NP_114066 (OMIM: 606316) protocadherin alpha-10 is ( 685) 2564 390.9 1.2e-107
NP_114037 (OMIM: 606312) protocadherin alpha-6 iso ( 686) 2546 388.3 7.3e-107
NP_115778 (OMIM: 603627) protocadherin gamma-C3 is ( 863) 2006 308.7 8.2e-83
NP_002579 (OMIM: 603627) protocadherin gamma-C3 is ( 934) 2006 308.7 8.7e-83
NP_114476 (OMIM: 606294) protocadherin gamma-A7 is ( 817) 1957 301.5 1.2e-80
NP_061743 (OMIM: 606294) protocadherin gamma-A7 is ( 932) 1957 301.5 1.3e-80
NP_115783 (OMIM: 606306) protocadherin gamma-C5 is ( 878) 1947 300.0 3.4e-80
NP_061752 (OMIM: 606306) protocadherin gamma-C5 is ( 944) 1947 300.0 3.6e-80
NP_115266 (OMIM: 606299) protocadherin gamma-B1 is ( 810) 1936 298.4 1e-79
NP_061745 (OMIM: 606299) protocadherin gamma-B1 is ( 927) 1936 298.4 1.1e-79
NP_114398 (OMIM: 606289) protocadherin gamma-A2 is ( 823) 1927 297.0 2.5e-79
NP_061738 (OMIM: 606289) protocadherin gamma-A2 is ( 932) 1927 297.1 2.8e-79
NP_115265 (OMIM: 603059) protocadherin gamma-A12 i ( 820) 1919 295.8 5.7e-79
NP_114479 (OMIM: 606297) protocadherin gamma-A10 i ( 850) 1919 295.9 5.9e-79
NP_003726 (OMIM: 603059) protocadherin gamma-A12 i ( 932) 1919 295.9 6.3e-79
NP_061736 (OMIM: 606297) protocadherin gamma-A10 i ( 936) 1919 295.9 6.3e-79
NP_114089 (OMIM: 606321) protocadherin alpha-C2 is ( 884) 1916 295.4 8.2e-79
NP_114442 (OMIM: 606291) protocadherin gamma-A4 is ( 851) 1894 292.2 7.6e-78
NP_061740 (OMIM: 606291) protocadherin gamma-A4 is ( 962) 1894 292.2 8.3e-78
NP_061758 (OMIM: 606341) protocadherin beta-15 pre ( 787) 1892 291.9 8.7e-78
NP_061746 (OMIM: 606300) protocadherin gamma-B2 is ( 931) 1889 291.5 1.4e-77
NP_115268 (OMIM: 606301) protocadherin gamma-B3 is ( 814) 1884 290.7 2e-77
>>NP_061733 (OMIM: 606313) protocadherin alpha-7 isoform (937 aa)
initn: 6164 init1: 6164 opt: 6164 Z-score: 4921.0 bits: 921.9 E(85289): 0
Smith-Waterman score: 6164; 100.0% identity (100.0% similar) in 937 aa overlap (1-937:1-937)
10 20 30 40 50 60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE0 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
850 860 870 880 890 900
910 920 930
pF1KE0 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
:::::::::::::::::::::::::::::::::::::
NP_061 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
910 920 930
>>NP_114040 (OMIM: 606313) protocadherin alpha-7 isoform (789 aa)
initn: 5119 init1: 5119 opt: 5119 Z-score: 4089.3 bits: 767.7 E(85289): 0
Smith-Waterman score: 5119; 100.0% identity (100.0% similar) in 785 aa overlap (1-785:1-785)
10 20 30 40 50 60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
:::::
NP_114 SSTDNVSHK
>>NP_061731 (OMIM: 606311) protocadherin alpha-5 isoform (936 aa)
initn: 5007 init1: 5007 opt: 5007 Z-score: 3998.9 bits: 751.3 E(85289): 5.3e-216
Smith-Waterman score: 5007; 82.7% identity (91.9% similar) in 927 aa overlap (11-937:10-936)
10 20 30 40 50 60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
: .:::. ..:: :.:: ::::::.:::::::.:::::::::::::::::
NP_061 MVYSRRGSLGSRLLLLWLLLAYWKAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
:::::.. : :::::::::::::::::::::::::: : :::::::::::.::::::::.
NP_061 PRLFRVASKGRGDLLEVNLQNGILFVNSRIDREELCRRRAECSIHLEVIVDRPLQVFHVE
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
: ::::::::: : .. ::: ::: ::::::::::: ::: :: : :::.::::: :
NP_061 VAVKDINDNPPRFSRQEQRLFILESRMPDSRFPLEGASDLDIGANAQLRYRLNPNEYFDL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
:: :...... : ::::: :::::: : .::. :::::::::::::::::.::: :::::
NP_061 DVKTNEEETNFLELVLRKSLDREETQEHRLLVIATDGGKPELTGTVQLLINVLDANDNAP
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
::...:.:.: ::. :::::. :::: :::.: .:.: ::. : :.:::: .. .:
NP_061 EFDKSIYNVRLLENAPSGTLVIKLNASDADEGINKEIVYFFSNLVLDDVKSKFIINSNTG
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
: : :..:.:. ...: ..:.::. ::.::: :.:...:::::.:....:.: ::.
NP_061 EIKVNGELDYEDYNSYEINIDAMDKSTFPLSGHCKVVVKLLDVNDNTPEMAITTLFLPVK
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
::: .:::.:::: ::: :.:::::::: :.:::::::::::::::::::::::::::.
NP_061 EDAPLSTVIALISVSDRDSGANGQVTCSLMPHVPFKLVSTFKNYYSLVLDSALDRESVSV
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPQYTVFVKENNPPGCHIFTVSAR
420 430 440 450 460 470
490 500 510 520 530 540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
:::::.:::::::::: ::::: ::::::::::::::::::::::::.::::::::::::
NP_061 DADAQENALVSYSLVERRVGERPLSSYVSVHAESGKVYALQPLDHEEVELLQFQVSARDA
480 490 500 510 520 530
550 560 570 580 590 600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
::::::::::::::::::::::::::.:::::::::: :::::::::::::::::::: :
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLVPRVGGTGGAVSELVPRSVGAGHVVAKVRAVDPD
540 550 560 570 580 590
610 620 630 640 650 660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
:::::::::::::. ..: ::::::::::::::::.::::.:::::::::::::::: ::
NP_061 SGYNAWLSYELQPAPGSARIPFRVGLYTGEISTTRSLDETEAPRHRLLVLVKDHGEPPLT
600 610 620 630 640 650
670 680 690 700 710 720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
::::::::::::::::::::::: : .:::. ::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRASAGAVGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTA
660 670 680 690 700 710
730 740 750 760 770 780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
::::: .:..:. ::::.:::::::::.::::::::::::.:::::::::::::::::
NP_061 LRCSAQPTEAVCTRGKPTLLCSSAVGSWSYSQQRRQRVCSGEAPPKTDLMAFSPSLPQGP
720 730 740 750 760 770
790 800 810 820 830 840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
780 790 800 810 820 830
850 860 870 880 890 900
pF1KE0 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDF
840 850 860 870 880 890
910 920 930
pF1KE0 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
:::::::::::::::::::::::::::::::::::::
NP_061 ITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930
>>NP_061726 (OMIM: 606318) protocadherin alpha-12 isofor (941 aa)
initn: 3862 init1: 3862 opt: 4884 Z-score: 3900.9 bits: 733.1 E(85289): 1.5e-210
Smith-Waterman score: 4884; 80.7% identity (90.6% similar) in 942 aa overlap (1-937:3-941)
10 20 30 40 50
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAE
.. : : ::...::: ...:::::.: ::::::: ::::::.:::::::::::::::
NP_061 MVIIGPRG--PGSQRLLLSLLLLAAWEVGSGQLHYSVYEEAKHGTFVGRIAQDLGLELAE
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 LVPRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFH
:::::::.. : .::::::::::::::::::::::.::::::::::::::::.:::::::
NP_061 LVPRLFRVASKRHGDLLEVNLQNGILFVNSRIDREKLCGRSAECSIHLEVIVDRPLQVFH
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE0 VDVEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYF
::::::::::::::: .... ..:: ::::.:::::::::::: :.:::: :: :: :
NP_061 VDVEVKDINDNPPVFREREQKVPVSESAPLDSHFPLEGASDADIGVNSLLTYALSLNENF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE0 FLDVPTS-NQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNND
: . :. .... : ::::::::::.::.:.::: . :::::::::.::. ::::: ::
NP_061 ELKIKTKKDKSILPE-LVLRKLLDREQTPKLNLLLMVIDGGKPELTGSVQIQITVLDVND
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE0 NAPVFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDP
:.:.::. : : : :::. : ::. :::: ::::::.: :... . . : : ..:
NP_061 NGPAFDKPSYKVVLSENVQNDTRVIQLNASDPDEGLNGEISYGIKMILPVSEKCMFSINP
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE0 LSGAITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSL
.: : . :..::::. :..: :.:.:::.: .::: :::::.:::::.:.. .:::::
NP_061 DTGEIRIYGELDFEENNAYEIQVNAIDKGIPSMAGHSMVLVEVLDVNDNVPEVMVTSLSL
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE0 PIPEDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRES
:. :::: ::::.:::: ::: :.:::: :::::.::::::::.::::::::::::::::
NP_061 PVQEDAQVGTVIALISVSDRDSGANGQVICSLTPHVPFKLVSTYKNYYSLVLDSALDRES
360 370 380 390 400 410
420 430 440 450 460 470
pF1KE0 VSAYELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTV
:::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::
NP_061 VSAYELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTV
420 430 440 450 460 470
480 490 500 510 520 530
pF1KE0 SAGDADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSA
:: :::::::::::::::: ::::.:::::::::::::::::::::::::::::::::::
NP_061 SAWDADAQKNALVSYSLVERRVGEHALSSYVSVHAESGKVYALQPLDHEELELLQFQVSA
480 490 500 510 520 530
540 550 560 570 580 590
pF1KE0 RDAGVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAV
:::::::::::::::::::::::::::::: .:..:::: :::::::::::::::::::
NP_061 RDAGVPPLGSNVTLQVFVLDENDNAPALLATPAGSAGGAVSELVPRSVGAGHVVAKVRAV
540 550 560 570 580 590
600 610 620 630 640 650
pF1KE0 DADSGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEP
::::::::::::::::.:.:: :::.:::::::::::: :::.:::::::::::::::::
NP_061 DADSGYNAWLSYELQPAAVGAHIPFHVGLYTGEISTTRILDEADAPRHRLLVLVKDHGEP
600 610 620 630 640 650
660 670 680 690 700 710
pF1KE0 SLTATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLL
.::.::::::::::.:::::.:::::.: . ::. :::.:::::::::::::::::::::
NP_061 ALTSTATVLVSLVENGQAPKTSSRASVGAVDPEAALVDINVYLIIAICAVSSLLVLTLLL
660 670 680 690 700 710
720 730 740 750 760 770
pF1KE0 YTALRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLP
::::::::: . . :. ::::::::::::::.::::::::::.:.:::::::::::::
NP_061 YTALRCSAPPTVSRCAPGKPTLVCSSAVGSWSYSQQRRQRVCSAESPPKTDLMAFSPSLQ
720 730 740 750 760 770
780 790 800 810 820 830
pF1KE0 QGPSSTDNP----RQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSAT
. . :: :::::::::::::::::::::::::::::::::::::::::::::::
NP_061 LSREDCLNPPSEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSAT
780 790 800 810 820 830
840 850 860 870 880 890
pF1KE0 PEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 PEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNS
840 850 860 870 880 890
900 910 920 930
pF1KE0 QIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::
NP_061 QIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
900 910 920 930 940
>>NP_114063 (OMIM: 606315) protocadherin alpha-9 isoform (950 aa)
initn: 4485 init1: 4485 opt: 4505 Z-score: 3598.8 bits: 677.2 E(85289): 1e-193
Smith-Waterman score: 5493; 90.1% identity (94.6% similar) in 943 aa overlap (8-937:8-950)
10 20 30 40 50 60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
:: :. ::: ..::: : .: :::::::::::.::.:::::::::::::::::
NP_114 MLYSSRGDPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
::::. : ::::::::::::::::::::::::::::::::::::::::.:::::::::
NP_114 PRLFQLDSKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_114 VEVKDINDNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
:::::::::::::::::::::::::::::::::::.:::::::::::::::. .::.:.
NP_114 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
:::: ::::.::::.: : .::::::::::.::::::::.::::::::: :::::::::
NP_114 EDAQLGTVIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
::::::::::::::::::: ::::::::::::::::: :::::::::::::::::::::
NP_114 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
:::::.:::::::::: :.:::.:::::::::::::::::::::::::::::::::::::
NP_114 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
::::::::::::::::::::::::::.::. :: ::: :.: :::::: ::.::::::::
NP_114 GVPPLGSNVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
::::::::::::: .:.:::::::::::::::::::::::::::.::::::::::::.::
NP_114 SGYNAWLSYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
:::::::::::::::::.:::::.: .:::. :::::::::::::::::::::::::::.
NP_114 ATATVLVSLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTV
670 680 690 700 710 720
730 740 750 760 770
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSL----
::::: .:: :. ::::::::::::::.::::::::::::: :::::::::.:
NP_114 LRCSAMPTEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGLSPCA
730 740 750 760 770 780
780 790 800 810 820
pF1KE0 --------PQGPS-STDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
:.. : :: .::::::::::::::::::::::::::::::::::::::::::
NP_114 GSTERTGEPSASSDSTGKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
790 800 810 820 830 840
830 840 850 860 870 880
pF1KE0 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
850 860 870 880 890 900
890 900 910 920 930
pF1KE0 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
910 920 930 940 950
>>NP_054724 (OMIM: 606315) protocadherin alpha-9 isoform (842 aa)
initn: 4921 init1: 4477 opt: 4486 Z-score: 3584.4 bits: 674.4 E(85289): 6.5e-193
Smith-Waterman score: 4486; 87.6% identity (94.0% similar) in 798 aa overlap (8-805:8-803)
10 20 30 40 50 60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
:: :. ::: ..::: : .: :::::::::::.::.:::::::::::::::::
NP_054 MLYSSRGDPEGQPLLLSLLILAMWVVGSGQLHYSVPEEAEHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
::::. : ::::::::::::::::::::::::::::::::::::::::.:::::::::
NP_054 PRLFQLDSKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
:::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
NP_054 VEVKDINDNPPVFPATQKNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
:::::::::::::::::::::::::::::::::::.:::::::::::::::. .::.:.
NP_054 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTLLVEVVDVNDNAPQLTIKTLSVPVK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
:::: ::::.::::.: : .::::::::::.::::::::.::::::::: :::::::::
NP_054 EDAQLGTVIALISVIDLDADANGQVTCSLTPHVPFKLVSTYKNYYSLVLDRALDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
::::::::::::::::::: ::::::::::::::::: :::::::::::::::::::::
NP_054 YELVVTARDGGSPSLWATARVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
:::::.:::::::::: :.:::.:::::::::::::::::::::::::::::::::::::
NP_054 DADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
::::::::::::::::::::::::::.::. :: ::: :.: :::::: ::.::::::::
NP_054 GVPPLGSNVTLQVFVLDENDNAPALLTPRMRGTDGAVSEMVLRSVGAGVVVGKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
::::::::::::: .:.:::::::::::::::::::::::::::.::::::::::::.::
NP_054 SGYNAWLSYELQPETASASIPFRVGLYTGEISTTRALDETDAPRQRLLVLVKDHGEPALT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
:::::::::::::::::.:::::.: .:::. :::::::::::::::::::::::::::.
NP_054 ATATVLVSLVESGQAPKSSSRASVGATGPEVTLVDVNVYLIIAICAVSSLLVLTLLLYTV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
::::: .:: :. ::::::::::::::.::::::::::::: :::::::::.: .:
NP_054 LRCSAMPTEGECAPGKPTLVCSSAVGSWSYSQQRRQRVCSGEGKQKTDLMAFSPGL--SP
730 740 750 760 770
790 800 810 820 830 840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
. .. : .:. ... ..:. :
NP_054 CAGSTERTGEPSASSDSTGKVGFSSILFIYIIFFLERYYRLLPGAVQIVLFIFLEIQQIF
780 790 800 810 820 830
>>NP_061730 (OMIM: 606310) protocadherin alpha-4 isoform (947 aa)
initn: 4219 init1: 4219 opt: 4239 Z-score: 3386.8 bits: 638.0 E(85289): 6.6e-182
Smith-Waterman score: 5235; 85.7% identity (92.8% similar) in 942 aa overlap (6-937:6-947)
10 20 30 40 50 60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
: .:.:::....::::::: ::::::: ::::::.:::::::::::::::::
NP_061 MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
:::::.. : :: ::::::::::::::::::::::: :::::::::::::.:::::::::
NP_061 PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
:::.:::::::::::::.:: ::::::::::::::::::::::::::::::::::::: :
NP_061 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
. : ... :: :::.::: :::::.::. :.::::::::::::::::::::::: :::::
NP_061 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
.::::.: :.: ::: :::::. :::::::::::::.::::.:.::..:::::.::..:
NP_061 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
: : :..:::::....: ::..::: ::.::: :.::: : :::.:.: . ::::::
NP_061 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
::: ::::.:::: :.:.:::: :::::: .::::::::::::::::::::::::::::
NP_061 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
:::::.:::::::::: ::::::::::::::::::::::::::::::::::::::.::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
:::::::::::::::::::::::::::::.::::::: :::: :::.:::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
::::::::::::: ..:: ::::::::::::::::::::::::::::::::::::::.::
NP_061 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
:::::::::::::::::::::: .: .::.. ::::::::::::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
::::: .::::. ::::::::::::::.::::: :::::::::::::::::::::..
NP_061 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSR
730 740 750 760 770 780
790 800 810 820 830
pF1KE0 SSTDN----------PRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVS
. :. :::::::::::::::::::::::::::::::::::::::::::::
NP_061 DREDQLQTTEESFAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVS
790 800 810 820 830 840
840 850 860 870 880 890
pF1KE0 SATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEP
850 860 870 880 890 900
900 910 920 930
pF1KE0 TNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
:::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
910 920 930 940
>>NP_113688 (OMIM: 606310) protocadherin alpha-4 isoform (798 aa)
initn: 4216 init1: 4216 opt: 4220 Z-score: 3372.7 bits: 635.2 E(85289): 4e-181
Smith-Waterman score: 4220; 84.1% identity (92.6% similar) in 779 aa overlap (6-784:6-784)
10 20 30 40 50 60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
: .:.:::....::::::: ::::::: ::::::.:::::::::::::::::
NP_113 MEFSWGSGQESRRLLLLLLLLAAWEAGNGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
:::::.. : :: ::::::::::::::::::::::: :::::::::::::.:::::::::
NP_113 PRLFRVASKGRGGLLEVNLQNGILFVNSRIDREELCRRSAECSIHLEVIVDRPLQVFHVD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
:::.:::::::::::::.:: ::::::::::::::::::::::::::::::::::::: :
NP_113 VEVRDINDNPPVFPATQKNLSIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
. : ... :: :::.::: :::::.::. :.::::::::::::::::::::::: :::::
NP_113 EKPPDDELVKGLGLILRKSLDREEAPEIFLVLTATDGGKPELTGTVQLLITVLDANDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
.::::.: :.: ::: :::::. :::::::::::::.::::.:.::..:::::.::..:
NP_113 AFDRTIYKVRLLENVPNGTLVIKLNASDLDEGLNGDIVYSFSNDISPNVKSKFHIDPITG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
: : :..:::::....: ::..::: ::.::: :.::: : :::.:.: . ::::::
NP_113 QIIVKGYIDFEESKSYEIIVEGIDKGQLPLSGHCRVIVEVEDNNDNVPDLEFKSLSLPIR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
::: ::::.:::: :.:.:::: :::::: .::::::::::::::::::::::::::::
NP_113 EDAPLGTVIALISVSDKDMGVNGLVTCSLTSHVPFKLVSTFKNYYSLVLDSALDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_113 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAW
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
:::::.:::::::::: ::::::::::::::::::::::::::::::::::::::.::::
NP_113 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVTARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
:::::::::::::::::::::::::::::.::::::: :::: :::.:::::::::::::
NP_113 GVPPLGSNVTLQVFVLDENDNAPALLAPRAGGTGGAVSELVPWSVGVGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
::::::::::::: ..:: ::::::::::::::::::::::::::::::::::::::.::
NP_113 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPALT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
:::::::::::::::::::::: .: .::.. ::::::::::::::::::::::::::::
NP_113 ATATVLVSLVESGQAPKASSRALVGAVGPDAALVDVNVYLIIAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
::::: .::::. ::::::::::::::.::::: :::::::::::::::::::::..
NP_113 LRCSALPTEGACAPGKPTLVCSSAVGSWSYSQQRRPRVCSGEGPPKTDLMAFSPSLPDSR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
. :
NP_113 DREDQLQTTEESFAKVSV
790
>>NP_061729 (OMIM: 606309) protocadherin alpha-3 isoform (950 aa)
initn: 4078 init1: 4078 opt: 4100 Z-score: 3276.0 bits: 617.5 E(85289): 9.8e-176
Smith-Waterman score: 5074; 82.9% identity (91.4% similar) in 943 aa overlap (8-937:8-950)
10 20 30 40 50 60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
:::.. ::: ...::: :.: ::::::: ::::::.:::::::::::::::::
NP_061 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
:::::.. : .:::::::::::::::::::::::::::::::::::::::.::::::::.
NP_061 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
::::::::: :::: . .::::.::: ::: :::::::::: :.:::: :. .::: :
NP_061 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
:: .....: :::::.: :.::.::. .::.:: ::::::::::.:: ::::: :::::
NP_061 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
.:.::.: :.: ::. ::::. ::.:::::.: :: :::..:.: :: ::::.::..:
NP_061 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
:.: :..:::::....: :::.::: ::.. :::::.:.::.:::.:.:.. :::::.
NP_061 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
::. .:::.:::: ::: ::::::::::::.::::::::::::::::::: ::::::::
NP_061 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
:::::::::::::::::::::::::::::::::::.: :::::::::::::::::::::
NP_061 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
:::::.:::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_061 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
:::::::::::::::::::::::::: ::::: :::: ::::::::::::::::::::::
NP_061 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
::::::::::::: ..:: ::::::::::::::::::::.::::::::::::::::::::
NP_061 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
::::::::::::::::::::.:: : .:::. :::::::::.::::::::::::::::::
NP_061 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
:::::: .:: :. ::::::::::::::.::::.:::::::: ::::::::::::: :
NP_061 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP
730 740 750 760 770 780
790 800 810 820
pF1KE0 SSTD-------------NPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
: : .::::::::::::::::::::::::::::::::::::::::::
NP_061 ISRDREEKQDVDVDLSAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
790 800 810 820 830 840
830 840 850 860 870 880
pF1KE0 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIR
850 860 870 880 890 900
890 900 910 920 930
pF1KE0 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 QEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
910 920 930 940 950
>>NP_113685 (OMIM: 606309) protocadherin alpha-3 isoform (824 aa)
initn: 4522 init1: 4076 opt: 4076 Z-score: 3257.8 bits: 613.9 E(85289): 1e-174
Smith-Waterman score: 4076; 79.9% identity (90.5% similar) in 792 aa overlap (8-799:8-799)
10 20 30 40 50 60
pF1KE0 MVCPNGYDPGGRHLLLFIIILAAWEAGRGQLHYSVPEEAKHGNFVGRIAQDLGLELAELV
:::.. ::: ...::: :.: ::::::: ::::::.:::::::::::::::::
NP_113 MLFSWREDPGAQCLLLSLLLLAASEVGSGQLHYSVSEEAKHGTFVGRIAQDLGLELAELV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 PRLFRAVCKFRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVERPLQVFHVD
:::::.. : .:::::::::::::::::::::::::::::::::::::::.::::::::.
NP_113 PRLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 VEVKDINDNPPVFPATQRNLFIAESRPLDSRFPLEGASDADIGENALLTYRLSPNEYFFL
::::::::: :::: . .::::.::: ::: :::::::::: :.:::: :. .::: :
NP_113 VEVKDINDNAPVFPMAVKNLFISESRQPGSRFSLEGASDADIGTNSLLTYSLDSTEYFTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 DVPTSNQQVKPLGLVLRKLLDREETPELHLLLTATDGGKPELTGTVQLLITVLDNNDNAP
:: .....: :::::.: :.::.::. .::.:: ::::::::::.:: ::::: :::::
NP_113 DVKRNDEEIKSLGLVLKKNLNREDTPKHYLLITAIDGGKPELTGTTQLKITVLDVNDNAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 VFDRTLYTVKLPENVSIGTLVIHPNASDLDEGLNGDIIYSFSSDVSPDIKSKFHMDPLSG
.:.::.: :.: ::. ::::. ::.:::::.: :: :::..:.: :: ::::.::..:
NP_113 AFERTIYKVRLLENAPNGTLVVTVNATDLDEGVNKDIAYSFNTDMSADILSKFHLDPVNG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 AITVIGHMDFEESRAHKIPVEAVDKGFPPLAGHCTVLVEVVDVNDNAPQLTLTSLSLPIP
:.: :..:::::....: :::.::: ::.. :::::.:.::.:::.:.:.. :::::.
NP_113 QISVKGNIDFEESKSYEIQVEATDKGNPPMSDHCTVLLEIVDINDNVPELVIQSLSLPVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 EDAQPGTVITLISVFDRDFGVNGQVTCSLTPRVPFKLVSTFKNYYSLVLDSALDRESVSA
::. .:::.:::: ::: ::::::::::::.::::::::::::::::::: ::::::::
NP_113 EDSPLSTVIALISVSDRDSGVNGQVTCSLTPHVPFKLVSTFKNYYSLVLDSPLDRESVSA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAG
:::::::::::::::::::::::::::::::::::.: :::::::::::::::::::::
NP_113 YELVVTARDGGSPSLWATASVSVEVADVNDNAPAFSQSEYTVFVKENNPPGCHIFTVSAR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 DADAQKNALVSYSLVELRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
:::::.:::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_113 DADAQENALVSYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 GVPPLGSNVTLQVFVLDENDNAPALLAPRVGGTGGAVRELVPRSVGAGHVVAKVRAVDAD
:::::::::::::::::::::::::: ::::: :::: ::::::::::::::::::::::
NP_113 GVPPLGSNVTLQVFVLDENDNAPALLMPRVGGIGGAVSELVPRSVGAGHVVAKVRAVDAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 SGYNAWLSYELQPVAAGASIPFRVGLYTGEISTTRALDETDAPRHRLLVLVKDHGEPSLT
::::::::::::: ..:: ::::::::::::::::::::.::::::::::::::::::::
NP_113 SGYNAWLSYELQPGTGGARIPFRVGLYTGEISTTRALDEVDAPRHRLLVLVKDHGEPSLT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 ATATVLVSLVESGQAPKASSRASLGIAGPETELVDVNVYLIIAICAVSSLLVLTLLLYTA
::::::::::::::::::::.:: : .:::. :::::::::.::::::::::::::::::
NP_113 ATATVLVSLVESGQAPKASSQASAGATGPEAALVDVNVYLIVAICAVSSLLVLTLLLYTA
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 LRCSAPSSEGACSLVKPTLVCSSAVGSWSFSQQRRQRVCSGEGPPKTDLMAFSPSLPQGP
:::::: .:: :. ::::::::::::::.::::.:::::::: ::::::::::::: :
NP_113 LRCSAPPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE0 SSTDNPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGE
: : .. . : ::..
NP_113 ISRDREEKQDVDVDLSAKVSNFYLFFPKCLCFSFLNVSTPLEIH
790 800 810 820
937 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 05:24:01 2016 done: Fri Nov 4 05:24:03 2016
Total Scan time: 14.330 Total Display time: 0.360
Function used was FASTA [36.3.4 Apr, 2011]